Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq442 307 3e-81 seq7941 178 4e-42 seq711 156 1e-35 seq15365 78.8 3e-12 seq604 77.0 1e-11 >seq442 Length=77255 Score = 307 bits (340), Expect = 3e-81 Identities = 311/398 (78%), Gaps = 14/398 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 11731 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 11790 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||| || | | || Sbjct 11791 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCGGCGAGAGTC 11850 Query 127 GGCCCGCGA--AGGAC------CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTC-C 176 | || | ||| ||||| | | ||||| | | | || || ||| | Sbjct 11851 GCAATGCCACCAGGTGGCTTTGCTTAAAACAAAGAAAAAAGA-GCCGGAGCTCAATTCTC 11909 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 | ||| || |||||||| || |||| | || ||||||||||| | || |||| | Sbjct 11910 TCCTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGTCGACCGAG--G 11967 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 11968 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 12027 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 12028 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 12087 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 |||||||| ||||||||||||||||||||||||||||| Sbjct 12088 GATAGTAGTTAGGGACAGTGGGAATCTCGTTAATCCAT 12125 >seq7941 Length=6166 Score = 178 bits (196), Expect = 4e-42 Identities = 115/126 (91%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5071 CATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 5130 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||| | ||||| || | ||| |||||||||||||||||||| Sbjct 5131 CCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAG 5190 Query 515 AAATCA 520 |||||| Sbjct 5191 AAATCA 5196 Score = 77.0 bits (84), Expect = 1e-11 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 45 >seq711 Length=64291 Score = 156 bits (172), Expect = 1e-35 Identities = 101/111 (91%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50021 TTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 49962 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||| | ||||| || | ||| ||||||||||| |||||||||||||| Sbjct 49961 CGCTTACTCGAATTACTACGATTTAACATTCAGAGCTCTGGGCAGAAATCA 49911 >seq15365 Length=1215 Score = 78.8 bits (86), Expect = 3e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTAGTTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 46 >seq604 Length=68428 Score = 77.0 bits (84), Expect = 1e-11 Identities = 91/121 (75%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCT 238 ||| ||| |||||||| || ||| | || ||| ||||||| | || |||| | || Sbjct 10614 TCACTGAATAAGTAAAGAATTGATGAAAGTGGTGATATTTCATTGTCGACCGAG--GTCT 10671 Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||| ||| |||||||||||| | | || |||| | | |||||| |||||||||||| Sbjct 10672 CCCACCTATGCTACACCTCTCATGACTCTTTACAATGCCAAACTAGAATCAAGCTCAACA 10731 Query 299 G 299 | Sbjct 10732 G 10732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634792459104