Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq19390 217 3e-54 seq8765 183 6e-44 >seq19390 Length=764 Score = 217 bits (240), Expect = 3e-54 Identities = 215/279 (77%), Gaps = 17/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||||| |||||| || | ||| Sbjct 507 GGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCATGAGGTACCGTCACG-TCC------- 456 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || ||||| ||||||||||||||||||||| ||| ||||| |||||||||| Sbjct 455 --------TTCGTCCCTCATAAAAGAAGTTTACAATCCGAAGA-CCTTCTTCCTTCACGC 405 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||||| |||| || ||| |||||| |||||||||| |||||||||||||||||| Sbjct 404 GGCGTTGCTGGGTCAGGCTTTCGCCCATTGCCCAATATTCCCCACTGCTGCCTCCCGTAG 345 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||| ||||||| ||||||||| | | |||||||| | ||| || Sbjct 344 GAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGAT 285 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || || || |||| ||||||||||| || |||| ||||| Sbjct 284 CGCAGCCTTGGTGAGCCGTTACCCCACCAACTAGCTAAT 246 >seq8765 Length=4561 Score = 183 bits (202), Expect = 6e-44 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| ||| ||| | |||||||| Sbjct 211 GGCTGCTGGCACGGAGTTAGCCGATACTTATTCGCCGCATACTCTCAAACCGCCACACGT 152 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | | |||| || ||||||||||||||| || ||| || || |||||||||| Sbjct 151 GACGGACTTTACTCTGCGGCAAAAGAAGTTTACAACCCATAGGGCCGTCTTCCTTCACGC 92 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| ||||| | | ||||||| |||||||||| ||||||||||||||||| Sbjct 91 GGCATGGCTGGGTCAGAATTCCTTCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 32 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||| |||||||||||||||||||| ||||| Sbjct 31 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068533622976