Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq50 201 3e-49 >seq50 Length=156596 Score = 201 bits (222), Expect = 3e-49 Identities = 219/284 (77%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 46767 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGA 46826 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| |||| ||||||||||| |||||||||| | | || |||||||| | ||| Sbjct 46827 ACCCTTATTCTCCGTTACCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTT 46884 Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTA 265 ||||||||||| | || | | |||| | | |||| | |||| | | |||| Sbjct 46885 GATAGGGCAGACACTTTTTCGGAATATCGGC-GAACAAG--CCGCCGATATGCTGCGTTA 46941 Query 266 TTATGAATCACCAAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCT 324 || || ||| ||| || |||||| | ||| ||| |||||||| | ||||| | Sbjct 46942 TTCAGAGTCAGCAAACTGCACCCGAAAGTGATTG--ATTTGCTCTAATAATTGCACCCTT 46999 Query 325 TCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACC 367 || ||||| |||||| || |||||||||||||| ||||||||| Sbjct 47000 TCAAAAGTCAGGGTTTATTTGCATGTATTAGCTCCAGAATTACC 47043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510023563008