Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq50 201 3e-49
>seq50
Length=156596
Score = 201 bits (222), Expect = 3e-49
Identities = 219/284 (77%), Gaps = 9/284 (3%)
Strand=Plus/Plus
Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 46767 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGA 46826
Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205
||||| |||| ||||||||||| |||||||||| | | || |||||||| | |||
Sbjct 46827 ACCCTTATTCTCCGTTACCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTT 46884
Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTA 265
||||||||||| | || | | |||| | | |||| | |||| | | ||||
Sbjct 46885 GATAGGGCAGACACTTTTTCGGAATATCGGC-GAACAAG--CCGCCGATATGCTGCGTTA 46941
Query 266 TTATGAATCACCAAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCT 324
|| || ||| ||| || |||||| | ||| ||| |||||||| | ||||| |
Sbjct 46942 TTCAGAGTCAGCAAACTGCACCCGAAAGTGATTG--ATTTGCTCTAATAATTGCACCCTT 46999
Query 325 TCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACC 367
|| ||||| |||||| || |||||||||||||| |||||||||
Sbjct 47000 TCAAAAGTCAGGGTTTATTTGCATGTATTAGCTCCAGAATTACC 47043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510023563008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |