Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq584 143 4e-32 seq4099 136 6e-30 seq1069 105 1e-20 seq982 100 4e-19 seq900 89.7 8e-16 >seq584 Length=263741 Score = 143 bits (158), Expect = 4e-32 Identities = 181/240 (75%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || ||||| |||||||| | |||||||| |||||| Sbjct 155830 GTACAAATGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGAAATTTC 155888 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 || || ||| || |||| |||| ||||||| ||||| | |||||| | || Sbjct 155889 -TCCTTCAAGGGTAATAATTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 155947 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| | || |||| | | ||| | || ||||| |||||||| Sbjct 155948 ACCAATGCCTTTCGGCAATGG--ATAGGCCAGCTGATTCTTCCATTGTAGAGCGCGTGCA 156005 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 156006 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 156062 >seq4099 Length=38631 Score = 136 bits (150), Expect = 6e-30 Identities = 180/240 (75%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||| ||||| ||| || ||||| |||||||| | ||||||||||||| | Sbjct 13457 GTACAAATGGCAGGAACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGAATT-C 13514 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 || ||| ||| || |||| |||| ||||||| | |||| | |||||| | || Sbjct 13515 CTTGTTCAAGGGAAATAATTACAATTCCCTATCCCGA-CACGGAAGAGTTTCAACGGTTT 13573 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | | | ||| |||| | || |||| | ||| | || |||||||||||||| Sbjct 13574 ATCAGTGCCTTTCGGTAACGG--ATAGGCCATCTGATTCTTCCATTGTAGCGCGCGTGCA 13631 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 13632 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 13688 >seq1069 Length=185886 Score = 105 bits (116), Expect = 1e-20 Identities = 167/229 (73%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| || | ||||| | |||||| | ||||||||||||| | Sbjct 179441 GTACAAATGGCAGGGACGTAATCTGCATGAGCTGG-TGACTCACACTTACTAGGAATT-C 179384 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 || ||| ||| || |||| | | |||| | | ||| | |||||| | || Sbjct 179383 CTTGTTCAAGGGAAATAATTACGTTTCCCTATTCGGGTTACGGAAGAGTTTCAACGGTTT 179324 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGAC--TCGTTGAATACATC-AGTGTAGCGCGCGT 176 ||| ||| ||||| | || |||| | ||| || | || | |||||||||||| Sbjct 179323 ACCAATGCCT-TCGGCAATGG--ATAGGCAATCG----ATTCTTCTATTGTAGCGCGCGT 179271 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||| | |||||||||||||||||||||||||||| | ||||| || Sbjct 179270 GCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT 179223 >seq982 Length=194932 Score = 100 bits (110), Expect = 4e-19 Identities = 146/198 (74%), Gaps = 9/198 (5%) Strand=Plus/Plus Query 29 GAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGAT 88 ||||| |||| || | ||||||||||||| ||||| | |||| || |||| |||| Sbjct 152265 GAGCT-GATGTATCACACTTACTAGGAATT-CCTCGCTCAAGATAAATAATTACAATTCC 152322 Query 89 CTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCTGTCGGCCAAGGTGATAGA 147 |||||| ||||| | |||||| || |||| | ||| ||||| | |||||| Sbjct 152323 TTATCCCGGTCACGGAAGAGTTTCAACAGTTTACAATG-CCTTTCGGCAA---TGATAGG 152378 Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 | | ||| | || |||| ||||||||| |||| | |||||||||||||||||||| Sbjct 152379 CAAGCTGATTCTTCCACTGTAACGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA- 152437 Query 208 CTGTTATTGCCTCAAACT 225 ||||||| | ||||| || Sbjct 152438 CTGTTATCG-CTCAATCT 152454 >seq900 Length=207650 Score = 89.7 bits (98), Expect = 8e-16 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || |||| ||||||||| | ||||||||||| ||| Sbjct 186378 GTACAAATGGCAGGGACGTAATCAGCGTGAGC-TGATGACTCACACTTACTAGGAA-TTC 186435 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC 101 |||||| ||| || |||| |||| ||||||| |||| Sbjct 186436 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCGGTCAC 186476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751827731605