Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq584 118 2e-24 seq4099 105 1e-20 >seq584 Length=263741 Score = 118 bits (130), Expect = 2e-24 Identities = 174/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||| ||||||||||| ||| | || || |||||| |||| | |||||| Sbjct 156701 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTTGAATGGTCGATCATGGA 156642 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| || ||||| | |||||||| ||| |||| ||| | || ||||| |||| Sbjct 156641 ATAATAAAAGAGGAC-TTCGGTTCTA-TTTATTGG-TTCAGGAACTAAAATAATGGTTAA 156585 Query 194 TAGGGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||| | ||||||| | |||| | | ||||||||||||| |||| | Sbjct 156584 GAGGGACAATTCGGGGGCATTCGTATCCCTGCGCGAGAGGTGAAATTCGTGGACCGCAGG 156525 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| ||| |||||||| || ||||| |||| ||||||||| | |||||||||| Sbjct 156524 GGGACGCCCTAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAAT-AAAGAACGAAAGT 156466 >seq4099 Length=38631 Score = 105 bits (116), Expect = 1e-20 Identities = 175/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||| ||||||||||| ||| | || | |||||| |||| | |||||| Sbjct 14334 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAACGTTTGCTTGAATGGTCGATCATGGA 14275 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| || ||||| | |||||||| ||| |||| ||| | || | ||||| |||| Sbjct 14274 ATAATAAAAGAGGAC-TTCGGTTCTA-TTTATTGG-TTCAGGAACTGAAATAATGGTTAA 14218 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 || | ||||||| || |||| | | ||||||| ||||| |||| | Sbjct 14217 GGGGACAATTCGGGGGCATC-GTATCCCTGCGCGAGAGGTG-AATTCGTGGACCGCAGGG 14160 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| ||| |||||||| || |||| |||| ||||||||||| |||||||||| Sbjct 14159 GGACGCCCTAAAGCGAAAGCATTTGCCAATAATGTCTTCATTAATCA-AGAACGAAAGTC 14101 Query 314 AGGGG 318 || || Sbjct 14100 AGAGG 14096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914983582656