Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq584 118 2e-24
seq4099 105 1e-20
>seq584
Length=263741
Score = 118 bits (130), Expect = 2e-24
Identities = 174/240 (73%), Gaps = 5/240 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133
||||||||||| ||||||||||| ||| | || || |||||| |||| | ||||||
Sbjct 156701 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTTGAATGGTCGATCATGGA 156642
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||||| || ||||| | |||||||| ||| |||| ||| | || ||||| ||||
Sbjct 156641 ATAATAAAAGAGGAC-TTCGGTTCTA-TTTATTGG-TTCAGGAACTAAAATAATGGTTAA 156585
Query 194 TAGGGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
||||| | ||||||| | |||| | | ||||||||||||| |||| |
Sbjct 156584 GAGGGACAATTCGGGGGCATTCGTATCCCTGCGCGAGAGGTGAAATTCGTGGACCGCAGG 156525
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||| ||| |||||||| || ||||| |||| ||||||||| | ||||||||||
Sbjct 156524 GGGACGCCCTAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAAT-AAAGAACGAAAGT 156466
>seq4099
Length=38631
Score = 105 bits (116), Expect = 1e-20
Identities = 175/245 (71%), Gaps = 6/245 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133
||||||||||| ||||||||||| ||| | || | |||||| |||| | ||||||
Sbjct 14334 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAACGTTTGCTTGAATGGTCGATCATGGA 14275
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||||| || ||||| | |||||||| ||| |||| ||| | || | ||||| ||||
Sbjct 14274 ATAATAAAAGAGGAC-TTCGGTTCTA-TTTATTGG-TTCAGGAACTGAAATAATGGTTAA 14218
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|| | ||||||| || |||| | | ||||||| ||||| |||| |
Sbjct 14217 GGGGACAATTCGGGGGCATC-GTATCCCTGCGCGAGAGGTG-AATTCGTGGACCGCAGGG 14160
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
||| ||| |||||||| || |||| |||| ||||||||||| ||||||||||
Sbjct 14159 GGACGCCCTAAAGCGAAAGCATTTGCCAATAATGTCTTCATTAATCA-AGAACGAAAGTC 14101
Query 314 AGGGG 318
|| ||
Sbjct 14100 AGAGG 14096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914983582656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |