Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq584 152 2e-34
seq10032 134 6e-29
seq1017 132 2e-28
seq374 132 2e-28
seq1667 131 7e-28
seq2783 127 9e-27
seq4014 125 3e-26
seq3757 123 1e-25
seq982 118 4e-24
seq784 104 1e-19
seq433 104 1e-19
seq1696 96.9 1e-17
seq206 89.7 2e-15
seq121 75.2 5e-11
>seq584
Length=263741
Score = 152 bits (168), Expect = 2e-34
Identities = 217/304 (71%), Gaps = 26/304 (9%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464
|| ||||||||| |||||||||| |||||| |||| | || ||||| | |||| ||
Sbjct 150620 CGACCCGTCTTGAAACACGGACCGAGGAGTGTAACTTGTACCCGAGTCTAAGGGTAGAAA 150561
Query 465 ACCCGTGCGCGTAATGAAAGTGAACG--------------GAGGTGGGAACC----CGT- 505
|||| |||||||||||||||| | || ||||| || |||
Sbjct 150560 ACCCCAAGGCGTAATGAAAGTGAAGGTCGTTTAACCGGCTGACATGGGATCCGTTTCGTT 150501
Query 506 ---GAGG--GTGCACCATCGACCGATCCTGATGTCTT-CGGATGGATTTGAGTAAGAGCA 559
|| | | ||||||| | || || || ||| | ||||| ||| ||||
Sbjct 150500 TACGAAGCAGCGCACCATGGCCCTGTCTTGTCTGCTTGCAGATGGGCAGCGGTA-GAGCG 150442
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
|| |||| |||||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 150441 TACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAAC 150382
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
||||||||| | || | |||||||| ||||||||||||||| | | ||| ||||||||
Sbjct 150381 TCTGGTGGAAGGCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGAGTATAGGG 150322
Query 680 GCGA 683
||||
Sbjct 150321 GCGA 150318
Score = 96.9 bits (106), Expect = 1e-17
Identities = 89/110 (81%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA-GGAAACTCTGGTGGAG 629
|||| || |||||||||||||||||| ||| |||| ||| |||||||||||||||
Sbjct 169535 ACCCTAAGAATGGTGAACTATGCCTGAGCAGGACGAAGT-AGATGGAAACTCTGGTGGAA 169477
Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
| || | |||||||| |||||||||||||| | | |||| ||||||||
Sbjct 169476 GGCCGTATCGGTTCTGACGTGCAAATCGATCATAGACTTTGAGTATAGGG 169427
>seq10032
Length=2126
Score = 134 bits (148), Expect = 6e-29
Identities = 97/112 (87%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
Sbjct 1010 CCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAACTCTGGTGGAAGT 1069
Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| | |||||||| ||||||||||||||| | | ||||||||||||||||
Sbjct 1070 CCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGA 1121
>seq1017
Length=190417
Score = 132 bits (146), Expect = 2e-28
Identities = 108/130 (83%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| ||| |||| ||||||||||||||| |||||||||||| ||| ||| ||||
Sbjct 126723 AGAGCGTAGAGGTTGCGACCCGAAAGATGGTAAACTATGCCTGAGCAGGACGAATTCAGA 126664
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||| | ||| | |||||| | ||||||||||||||| | ||||||
Sbjct 126663 GGAAACTCTGGTGGAAGTTCGTATCGGTTCCGACGTGCAAATCGATCG-AGGACTTGGGT 126605
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 126604 ATAGGGGCGA 126595
>seq374
Length=316321
Score = 132 bits (146), Expect = 2e-28
Identities = 108/130 (83%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||| |||||||||||||| ||||||||||| | ||| |||| ||||
Sbjct 97484 AGAGCGTACAGGTTGCGACCCGAAAGATGGAGAACTATGCCT-AGCAGGACGAAGTCAGA 97542
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||| | || | |||||||| ||||||||||||||| | | ||||||
Sbjct 97543 GGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGT 97602
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 97603 ATAGGGGCGA 97612
>seq1667
Length=130740
Score = 131 bits (144), Expect = 7e-28
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||| ||||| |||||||||||||||| ||||| | || | || ||||
Sbjct 16929 AGAGCGTACAGGTTGCGACCCAAAAGATGGTGAACTATACCTGAGCAAGGCGGAGTCAGA 16870
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||| | || | |||||||| ||||||||||||||| | | ||||||
Sbjct 16869 GGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGT 16810
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 16809 ATAGGGGCGA 16800
>seq2783
Length=75324
Score = 127 bits (140), Expect = 9e-27
Identities = 98/114 (86%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGT-GAAGCCAGAGGAAACTCT-GGTGGAG 629
|||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||
Sbjct 7576 CCCGAAAGATGGTGAACTATGCCTGAGCAGGGACGAAGTCAGAGGAAACTCTTGGTGGAA 7517
Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| || | |||||||| ||||||||||||||| | | ||||||||||||||||
Sbjct 7516 GTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGA 7463
>seq4014
Length=40448
Score = 125 bits (138), Expect = 3e-26
Identities = 210/302 (70%), Gaps = 29/302 (10%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464
|| ||||||||| |||||||||| |||||| |||| | | |||||| ||||| ||
Sbjct 11381 CGACCCGTCTTGAAACACGGACCGAGGAGTGTAACTTGTGCGCGAGTCAAAGGGTGGAAA 11322
Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGT--------------GGGAACCCGTG---- 506
|| | ||||||||||||| || | ||| |||| || ||
Sbjct 11321 ACTCCAAGGCGTAATGAAAGTAAAGGTCGGTTAACCGGCTGACATGGGATCCGTTGTTTA 11262
Query 507 ---AG-GGTGCACCATCGACCGATCCTGATGTCTT-CGGATGGATTTGAGTAAGAGCATA 561
|| || || |||| | || || || ||| | ||||| ||| |||| ||
Sbjct 11261 CGAAGCGGCGCCCCATGGCCCTGTCTTGTCTGCTTGCAGATGGGCAGCGGTA-GAGCGTA 11203
Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621
|||| || ||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 11202 CAGGTTGCGA---GAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAACTC 11146
Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||||||| || | |||||||| ||||||||||||||| | | ||||||||||||||
Sbjct 11145 TGGTGGA--ACCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGC 11088
Query 682 GA 683
||
Sbjct 11087 GA 11086
>seq3757
Length=45963
Score = 123 bits (136), Expect = 1e-25
Identities = 106/130 (82%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||| |||||||||||||||||||||| ||| | ||| |||| ||||
Sbjct 15534 AGAGCGTATAGGTTGCGACCCGAAAGATGGTGAACTATCCCTTACCAGGA-GAAGTCAGA 15592
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||| ||||||| | || | |||||||| |||| |||||||||| | | ||||||
Sbjct 15593 GGAAACTGTGGTGGAAGTCCGTATCGGTTCTGACGTGGAAATCGATCGATAGACTTGGGT 15652
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 15653 ATAGGGGCGA 15662
>seq982
Length=194932
Score = 118 bits (130), Expect = 4e-24
Identities = 104/130 (80%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||| |||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 150277 AGAGCGTACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGA 150218
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||| | || | || || || ||||||||||||||| | ||||||
Sbjct 150217 GGAAACTCTGGTGGAAGTCCGTATCGATTTTGACGTGCAAATCGATCGATGGACTTGGGT 150158
Query 674 ATAGGGGCGA 683
|| | | |||
Sbjct 150157 ATGGAGACGA 150148
Score = 89.7 bits (98), Expect = 2e-15
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98
|||||| |||| ||| | |||||| ||||| |||| | ||| ||| ||||||||||||
Sbjct 150838 GAGTCGGGTTGCTTGAAATTGCAGC-CTAAACTGGGTGACAAACTTCATCTAAAGCTAAA 150780
Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
||| | || || ||||||| ||||||| ||| ||| | || |||| |||||| |
Sbjct 150779 TATAGACCCGAATTCGATAGCAAACAAGTATTGTGGAGGAAGGTTGCAAAGAACTTTGAA 150720
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||| | || | || | |||| ||
Sbjct 150719 GAGAGAGTTCAAGAGAGCGTAACATCGCTGGAGTGGAACCG 150679
>seq784
Length=224811
Score = 104 bits (114), Expect = 1e-19
Identities = 94/118 (80%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629
||||| |||||||| ||||||||| ||| ||| |||| |||||||||||||| ||||
Sbjct 217391 GACCCCAAAGATGGCGAACTATGCTTGAGCAGGACGAAGTCAGAGGAAACTCTGATGGAA 217450
Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA----TAGGGGCGA 683
| || | |||||||| ||| ||||||||||| ||| || |||| |||||||||
Sbjct 217451 GTCCGTATCGGTTCTGACGTACAAATCGATCGATAAACTTTGGTATATGTAGGGGCGA 217508
>seq433
Length=299144
Score = 104 bits (114), Expect = 1e-19
Identities = 96/119 (81%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
|||| |||||||||||| |||||||||| |||| ||| |||| |||||||||||||||
Sbjct 188938 GTTGCGACCCGAAAGATAGTGAACTATGTCTGAGCAGGACGAAGTCAGAGGAAACTCTGG 188879
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| || | | |||||| || ||| |||||||| | | |||||||||||| |||
Sbjct 188878 TGGAATTCCGTATC-GTTCTGACG-GCAGATCGATCGATAGACTTGGGTATAGGGACGA 188822
>seq1696
Length=128285
Score = 96.9 bits (106), Expect = 1e-17
Identities = 97/125 (78%), Gaps = 1/125 (1%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || ||||||| || |||||||||||||||||||||| ||| |||| ||||
Sbjct 90159 AGAGCGTACAGGTTGGGATCCAAAAGATGGTGAACTATGCCTGAG-AGGACGAAGGCAGA 90101
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
| || ||| || | | | || | |||||||| | ||||||||||||| | | |||||
Sbjct 90100 GAAAGCTCAGGCGAAAGTCCGTACCGGTTCTGACATGCAAATCGATCGATAGACTTGGGC 90041
Query 674 ATAGG 678
|||||
Sbjct 90040 ATAGG 90036
Score = 96.9 bits (106), Expect = 1e-17
Identities = 121/162 (75%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAA 97
||||||| |||| ||| | |||||| ||||| |||| | |||| ||| |||| |||||
Sbjct 90720 CGAGTCG-GTTGCTTGAAAGTGCAGC-CTAAAGTGGGTGATAAACTTCACCTAAGGCTAA 90663
Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157
|||| | || ||||||| | ||||| |||| ||||| || | || ||||||
Sbjct 90662 ATATGGAGTCGAATTCGATAGCAAAGAAGTACTGTGAAGGAAAGTTGCAGAGAACTTTGA 90603
Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
| |||||||| || || ||||||||||| |||| |||| ||
Sbjct 90602 AGAGAGAGTTCAAGAGAACGTGAAATTGCTGAAGTGGAACCG 90561
>seq206
Length=388919
Score = 89.7 bits (98), Expect = 2e-15
Identities = 103/132 (78%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT-GAAGCCAG 612
||||| || |||| ||||||||||| ||||| ||||| ||| || | |||| |||
Sbjct 145967 AGAGCGTACAGGTTGCGACCCGAAAGAATGTGAA-TATGC-TGAGCAGTGACGAAGTCAG 146024
Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC-AAATCGATCGTCAAATTTGG 671
|||||||||||||||| | || | |||||||| ||||| ||||||| | | | ||||
Sbjct 146025 AGGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCGAAATCGA-GGATAGACTTGG 146083
Query 672 GTATAGGGGCGA 683
||||| ||||||
Sbjct 146084 GTATATGGGCGA 146095
>seq121
Length=466330
Score = 75.2 bits (82), Expect = 5e-11
Identities = 75/96 (78%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645
|||| | |||| ||| ||| |||||||||||||||||||| | || | ||||||||
Sbjct 144781 AACTTTTTCTGAGGAGGACGAAATCAGAGGAAACTCTGGTGGAGTC-CGTATCGGTTCTG 144723
Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||||||||||| | || | || || ||||||||
Sbjct 144722 AGGTGCAAATCGATAGACACACTTCGGCATAGGGGC 144687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079492771850
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