Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq584 152 2e-34 seq10032 134 6e-29 seq1017 132 2e-28 seq374 132 2e-28 seq1667 131 7e-28 seq2783 127 9e-27 seq4014 125 3e-26 seq3757 123 1e-25 seq982 118 4e-24 seq784 104 1e-19 seq433 104 1e-19 seq1696 96.9 1e-17 seq206 89.7 2e-15 seq121 75.2 5e-11 >seq584 Length=263741 Score = 152 bits (168), Expect = 2e-34 Identities = 217/304 (71%), Gaps = 26/304 (9%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||| |||||| |||| | || ||||| | |||| || Sbjct 150620 CGACCCGTCTTGAAACACGGACCGAGGAGTGTAACTTGTACCCGAGTCTAAGGGTAGAAA 150561 Query 465 ACCCGTGCGCGTAATGAAAGTGAACG--------------GAGGTGGGAACC----CGT- 505 |||| |||||||||||||||| | || ||||| || ||| Sbjct 150560 ACCCCAAGGCGTAATGAAAGTGAAGGTCGTTTAACCGGCTGACATGGGATCCGTTTCGTT 150501 Query 506 ---GAGG--GTGCACCATCGACCGATCCTGATGTCTT-CGGATGGATTTGAGTAAGAGCA 559 || | | ||||||| | || || || ||| | ||||| ||| |||| Sbjct 150500 TACGAAGCAGCGCACCATGGCCCTGTCTTGTCTGCTTGCAGATGGGCAGCGGTA-GAGCG 150442 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || |||| |||||||||||||||||||||||||||| ||| |||| |||||||||| Sbjct 150441 TACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAAC 150382 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||||| | || | |||||||| ||||||||||||||| | | ||| |||||||| Sbjct 150381 TCTGGTGGAAGGCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGAGTATAGGG 150322 Query 680 GCGA 683 |||| Sbjct 150321 GCGA 150318 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/110 (81%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA-GGAAACTCTGGTGGAG 629 |||| || |||||||||||||||||| ||| |||| ||| ||||||||||||||| Sbjct 169535 ACCCTAAGAATGGTGAACTATGCCTGAGCAGGACGAAGT-AGATGGAAACTCTGGTGGAA 169477 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 | || | |||||||| |||||||||||||| | | |||| |||||||| Sbjct 169476 GGCCGTATCGGTTCTGACGTGCAAATCGATCATAGACTTTGAGTATAGGG 169427 >seq10032 Length=2126 Score = 134 bits (148), Expect = 6e-29 Identities = 97/112 (87%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| | Sbjct 1010 CCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAACTCTGGTGGAAGT 1069 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | |||||||| ||||||||||||||| | | |||||||||||||||| Sbjct 1070 CCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGA 1121 >seq1017 Length=190417 Score = 132 bits (146), Expect = 2e-28 Identities = 108/130 (83%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| ||| |||| ||||||||||||||| |||||||||||| ||| ||| |||| Sbjct 126723 AGAGCGTAGAGGTTGCGACCCGAAAGATGGTAAACTATGCCTGAGCAGGACGAATTCAGA 126664 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | ||| | |||||| | ||||||||||||||| | |||||| Sbjct 126663 GGAAACTCTGGTGGAAGTTCGTATCGGTTCCGACGTGCAAATCGATCG-AGGACTTGGGT 126605 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 126604 ATAGGGGCGA 126595 >seq374 Length=316321 Score = 132 bits (146), Expect = 2e-28 Identities = 108/130 (83%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||| ||||||||||| | ||| |||| |||| Sbjct 97484 AGAGCGTACAGGTTGCGACCCGAAAGATGGAGAACTATGCCT-AGCAGGACGAAGTCAGA 97542 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | |||||||| ||||||||||||||| | | |||||| Sbjct 97543 GGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGT 97602 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 97603 ATAGGGGCGA 97612 >seq1667 Length=130740 Score = 131 bits (144), Expect = 7e-28 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| ||||| |||||||||||||||| ||||| | || | || |||| Sbjct 16929 AGAGCGTACAGGTTGCGACCCAAAAGATGGTGAACTATACCTGAGCAAGGCGGAGTCAGA 16870 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | |||||||| ||||||||||||||| | | |||||| Sbjct 16869 GGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGT 16810 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 16809 ATAGGGGCGA 16800 >seq2783 Length=75324 Score = 127 bits (140), Expect = 9e-27 Identities = 98/114 (86%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGT-GAAGCCAGAGGAAACTCT-GGTGGAG 629 |||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||| Sbjct 7576 CCCGAAAGATGGTGAACTATGCCTGAGCAGGGACGAAGTCAGAGGAAACTCTTGGTGGAA 7517 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || | |||||||| ||||||||||||||| | | |||||||||||||||| Sbjct 7516 GTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGA 7463 >seq4014 Length=40448 Score = 125 bits (138), Expect = 3e-26 Identities = 210/302 (70%), Gaps = 29/302 (10%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||| |||||| |||| | | |||||| ||||| || Sbjct 11381 CGACCCGTCTTGAAACACGGACCGAGGAGTGTAACTTGTGCGCGAGTCAAAGGGTGGAAA 11322 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGT--------------GGGAACCCGTG---- 506 || | ||||||||||||| || | ||| |||| || || Sbjct 11321 ACTCCAAGGCGTAATGAAAGTAAAGGTCGGTTAACCGGCTGACATGGGATCCGTTGTTTA 11262 Query 507 ---AG-GGTGCACCATCGACCGATCCTGATGTCTT-CGGATGGATTTGAGTAAGAGCATA 561 || || || |||| | || || || ||| | ||||| ||| |||| || Sbjct 11261 CGAAGCGGCGCCCCATGGCCCTGTCTTGTCTGCTTGCAGATGGGCAGCGGTA-GAGCGTA 11203 Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 |||| || ||||||||||||||||||||||| ||| |||| |||||||||||| Sbjct 11202 CAGGTTGCGA---GAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAACTC 11146 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| || | |||||||| ||||||||||||||| | | |||||||||||||| Sbjct 11145 TGGTGGA--ACCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGC 11088 Query 682 GA 683 || Sbjct 11087 GA 11086 >seq3757 Length=45963 Score = 123 bits (136), Expect = 1e-25 Identities = 106/130 (82%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||| ||| | ||| |||| |||| Sbjct 15534 AGAGCGTATAGGTTGCGACCCGAAAGATGGTGAACTATCCCTTACCAGGA-GAAGTCAGA 15592 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||| ||||||| | || | |||||||| |||| |||||||||| | | |||||| Sbjct 15593 GGAAACTGTGGTGGAAGTCCGTATCGGTTCTGACGTGGAAATCGATCGATAGACTTGGGT 15652 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 15653 ATAGGGGCGA 15662 >seq982 Length=194932 Score = 118 bits (130), Expect = 4e-24 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| |||| |||| Sbjct 150277 AGAGCGTACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGA 150218 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | || || || ||||||||||||||| | |||||| Sbjct 150217 GGAAACTCTGGTGGAAGTCCGTATCGATTTTGACGTGCAAATCGATCGATGGACTTGGGT 150158 Query 674 ATAGGGGCGA 683 || | | ||| Sbjct 150157 ATGGAGACGA 150148 Score = 89.7 bits (98), Expect = 2e-15 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||| ||| | |||||| ||||| |||| | ||| ||| |||||||||||| Sbjct 150838 GAGTCGGGTTGCTTGAAATTGCAGC-CTAAACTGGGTGACAAACTTCATCTAAAGCTAAA 150780 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| | || || ||||||| ||||||| ||| ||| | || |||| |||||| | Sbjct 150779 TATAGACCCGAATTCGATAGCAAACAAGTATTGTGGAGGAAGGTTGCAAAGAACTTTGAA 150720 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||| | || | || | |||| || Sbjct 150719 GAGAGAGTTCAAGAGAGCGTAACATCGCTGGAGTGGAACCG 150679 >seq784 Length=224811 Score = 104 bits (114), Expect = 1e-19 Identities = 94/118 (80%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||| |||||||| ||||||||| ||| ||| |||| |||||||||||||| |||| Sbjct 217391 GACCCCAAAGATGGCGAACTATGCTTGAGCAGGACGAAGTCAGAGGAAACTCTGATGGAA 217450 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA----TAGGGGCGA 683 | || | |||||||| ||| ||||||||||| ||| || |||| ||||||||| Sbjct 217451 GTCCGTATCGGTTCTGACGTACAAATCGATCGATAAACTTTGGTATATGTAGGGGCGA 217508 >seq433 Length=299144 Score = 104 bits (114), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| |||||||||||| |||||||||| |||| ||| |||| ||||||||||||||| Sbjct 188938 GTTGCGACCCGAAAGATAGTGAACTATGTCTGAGCAGGACGAAGTCAGAGGAAACTCTGG 188879 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || | | |||||| || ||| |||||||| | | |||||||||||| ||| Sbjct 188878 TGGAATTCCGTATC-GTTCTGACG-GCAGATCGATCGATAGACTTGGGTATAGGGACGA 188822 >seq1696 Length=128285 Score = 96.9 bits (106), Expect = 1e-17 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||| || |||||||||||||||||||||| ||| |||| |||| Sbjct 90159 AGAGCGTACAGGTTGGGATCCAAAAGATGGTGAACTATGCCTGAG-AGGACGAAGGCAGA 90101 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 | || ||| || | | | || | |||||||| | ||||||||||||| | | ||||| Sbjct 90100 GAAAGCTCAGGCGAAAGTCCGTACCGGTTCTGACATGCAAATCGATCGATAGACTTGGGC 90041 Query 674 ATAGG 678 ||||| Sbjct 90040 ATAGG 90036 Score = 96.9 bits (106), Expect = 1e-17 Identities = 121/162 (75%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAA 97 ||||||| |||| ||| | |||||| ||||| |||| | |||| ||| |||| ||||| Sbjct 90720 CGAGTCG-GTTGCTTGAAAGTGCAGC-CTAAAGTGGGTGATAAACTTCACCTAAGGCTAA 90663 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 |||| | || ||||||| | ||||| |||| ||||| || | || |||||| Sbjct 90662 ATATGGAGTCGAATTCGATAGCAAAGAAGTACTGTGAAGGAAAGTTGCAGAGAACTTTGA 90603 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | |||||||| || || ||||||||||| |||| |||| || Sbjct 90602 AGAGAGAGTTCAAGAGAACGTGAAATTGCTGAAGTGGAACCG 90561 >seq206 Length=388919 Score = 89.7 bits (98), Expect = 2e-15 Identities = 103/132 (78%), Gaps = 5/132 (4%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT-GAAGCCAG 612 ||||| || |||| ||||||||||| ||||| ||||| ||| || | |||| ||| Sbjct 145967 AGAGCGTACAGGTTGCGACCCGAAAGAATGTGAA-TATGC-TGAGCAGTGACGAAGTCAG 146024 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC-AAATCGATCGTCAAATTTGG 671 |||||||||||||||| | || | |||||||| ||||| ||||||| | | | |||| Sbjct 146025 AGGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCGAAATCGA-GGATAGACTTGG 146083 Query 672 GTATAGGGGCGA 683 ||||| |||||| Sbjct 146084 GTATATGGGCGA 146095 >seq121 Length=466330 Score = 75.2 bits (82), Expect = 5e-11 Identities = 75/96 (78%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 |||| | |||| ||| ||| |||||||||||||||||||| | || | |||||||| Sbjct 144781 AACTTTTTCTGAGGAGGACGAAATCAGAGGAAACTCTGGTGGAGTC-CGTATCGGTTCTG 144723 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||||||| | || | || || |||||||| Sbjct 144722 AGGTGCAAATCGATAGACACACTTCGGCATAGGGGC 144687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079492771850