Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq4823 95.1 6e-18 seq3757 95.1 6e-18 seq584 95.1 6e-18 seq334 95.1 6e-18 seq206 95.1 6e-18 seq1017 89.7 2e-16 seq2783 86.0 3e-15 seq982 86.0 3e-15 seq1930 80.6 1e-13 seq11700 77.0 1e-12 seq4 77.0 1e-12 seq9200 75.2 5e-12 seq546 71.6 6e-11 >seq4823 Length=25678 Score = 95.1 bits (104), Expect = 6e-18 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| Sbjct 8967 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 9026 Query 61 CCGAATC 67 | ||||| Sbjct 9027 CTGAATC 9033 >seq3757 Length=45963 Score = 95.1 bits (104), Expect = 6e-18 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| Sbjct 14758 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 14817 Query 61 CCGAATC 67 | ||||| Sbjct 14818 CTGAATC 14824 >seq584 Length=263741 Score = 95.1 bits (104), Expect = 6e-18 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| Sbjct 151226 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 151167 Query 61 CCGAATC 67 | ||||| Sbjct 151166 CTGAATC 151160 >seq334 Length=329709 Score = 95.1 bits (104), Expect = 6e-18 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| Sbjct 318528 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 318587 Query 61 CCGAATC 67 | ||||| Sbjct 318588 CTGAATC 318594 >seq206 Length=388919 Score = 95.1 bits (104), Expect = 6e-18 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| Sbjct 145161 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 145220 Query 61 CCGAATC 67 | ||||| Sbjct 145221 CTGAATC 145227 >seq1017 Length=190417 Score = 89.7 bits (98), Expect = 2e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||| || ||||||||||||||||| |||| ||||||||| Sbjct 127499 GGAAAAGAAACTAACAAGGATTCTCTTAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 127440 Query 61 CCGAATC 67 | ||||| Sbjct 127439 CTGAATC 127433 >seq2783 Length=75324 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 ||||||||||||| |||||||||| ||||||||||||||||| | || |||||||||| Sbjct 7933 AAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAACGGAGAGAAGCCCAGCGCT 7874 Query 63 GAATC 67 ||||| Sbjct 7873 GAATC 7869 >seq982 Length=194932 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||| ||||||||||||| |||| ||| ||||| Sbjct 151053 GGAAAAGAAACTAACAAGGATTCCCTTAGTGACGGCGAGTGAACGGGGAGAAGCTCAGCG 150994 Query 61 CCGAATC 67 | ||||| Sbjct 150993 CTGAATC 150987 >seq1930 Length=114119 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| ||||||||| |||||||| | ||||||||||||||||| |||| ||| ||||| Sbjct 49544 GGAAAGGAAACTAACAAGGATTCCATTAGTAACGGCGAGTGAACGGGGAGAAGCGCAGCG 49485 Query 61 CCGAATC 67 | ||||| Sbjct 49484 CTGAATC 49478 >seq11700 Length=1310 Score = 77.0 bits (84), Expect = 1e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||| |||||||||||| |||| ||| |||| Sbjct 752 GGAAAAGAAACTAACAAGGATTCCCTTAGTGGCGGCGAGTGAACGGGGAGAAGCTCAGCA 811 Query 61 CCGAATC 67 | ||||| Sbjct 812 CTGAATC 818 >seq4 Length=1026473 Score = 77.0 bits (84), Expect = 1e-12 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| |||||||||||||||| ||| ||| | |||| Sbjct 1001928 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAA-TGGGGAGAAGCTAGCG 1001986 Query 61 CCGAATC 67 | ||||| Sbjct 1001987 CTGAATC 1001993 >seq9200 Length=2974 Score = 75.2 bits (82), Expect = 5e-12 Identities = 59/68 (87%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAG-AGCCCAGC 59 |||||||||||||| |||||||||| |||| ||||||||||| |||||| |||||| | Sbjct 2169 GGAAAAGAAACTAATAAGGATTCCCTTGGTAATGGCGAGTGAAC-GGGAAGAAGCCCAAC 2111 Query 60 GCCGAATC 67 || ||||| Sbjct 2110 GCGGAATC 2103 >seq546 Length=271221 Score = 71.6 bits (78), Expect = 6e-11 Identities = 56/67 (84%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 || |||||||| ||| |||||||||| |||| ||||||||||| ||| ||||||||| Sbjct 89624 GGTAAAGAAACCAACAAGGATTCCCTTGGTAATGGCGAGTGAACGAGGAGAAGCCCAGCG 89565 Query 61 CCGAATC 67 | ||||| Sbjct 89564 CGGAATC 89558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230348922480