Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4099 190 3e-46 seq584 181 2e-43 seq1069 167 4e-39 seq982 104 4e-20 seq377 75.2 2e-11 >seq4099 Length=38631 Score = 190 bits (210), Expect = 3e-46 Identities = 192/243 (79%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || ||| Sbjct 13614 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 13672 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCG 135 | || | |||| | || | ||||||||||||| || | | | | || Sbjct 13673 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGT-AGACTGGACTTGAAAATCC 13730 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | | |||||||||||| || |||||| ||||||||||||| || |||||||||| || Sbjct 13731 A-GCCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAAGCAGACAAATCGCT 13789 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||| ||||||||||||||| ||| |||| |||||||||| ||||||| Sbjct 13790 CCACCAACTAAGAATGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCT 13849 Query 256 GTC 258 ||| Sbjct 13850 GTC 13852 >seq584 Length=263741 Score = 181 bits (200), Expect = 2e-43 Identities = 191/244 (78%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||||| |||||||| |||| | |||||||||||||||||||||||||||| || ||| Sbjct 155988 CATTGTAGAGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 156046 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC--ATAGTC 134 | || | |||| | || | ||||||||||||| || | ||| | | || Sbjct 156047 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGT-AGACTG-AACTTGAAAATC 156103 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | | |||||||||||| || | |||| ||||||| ||||| ||||||||||||| | Sbjct 156104 CA-GCCACTATTTAGCAGGCTAGAGCCTCGCTCGTTATGGGAATAAACCAGACAAATCGC 156162 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||| ||||||||||||||||||||||||| ||| |||| |||||| ||| |||||| Sbjct 156163 TCCACTAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGTGCTTTCAATC 156222 Query 255 TGTC 258 |||| Sbjct 156223 TGTC 156226 >seq1069 Length=185886 Score = 167 bits (184), Expect = 4e-39 Identities = 187/245 (76%), Gaps = 15/245 (6%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||||||||||||| |||| | |||||||||||||||||||||||||||| || |||| | Sbjct 179282 TGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCAATC 179224 Query 80 TT------CCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 | | | | || | || | ||||| ||||||| || | | | | Sbjct 179223 TCGTGCGGCTAATCCCTTTACACCGCTTATCCCTTTAAGAAGGACTGGACTTA--AAAAT 179166 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | |||||||||||| ||||| | |||||||||||| ||||||||||||| Sbjct 179165 CCA-GCCACTATTTAGCAGGA----GTCTCAT-CGTTATCGGAATAAACCAGACAAATCG 179112 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||| Sbjct 179111 CTCCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAAT 179052 Query 254 CTGTC 258 ||||| Sbjct 179051 CTGTC 179047 >seq982 Length=194932 Score = 104 bits (114), Expect = 4e-20 Identities = 175/242 (72%), Gaps = 11/242 (5%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||| ||||||||| |||| | ||||||||||||||||||||| |||||| || ||| Sbjct 152393 CACTGTAACGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGAC-TGTTATCGC-TCA 152450 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCG 135 | || | | || ||| || | | ||| ||||||| || | | | | || Sbjct 152451 ATCT--CGT--GC-GGACACCGCTTATTCCTTTAAGAAGT-AGACTGGACTTGAGAATCC 152504 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | ||||||||||| | || ||||| ||||||||||||| || |||||||||| Sbjct 152505 AACCA-CTATTTAGCAGCTAGAG-TCTCGATCGTTATCGGAATGAATCAGACAAATCGTA 152562 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||| |||||||| ||||| || | ||| | | |||| || || || | |||||| Sbjct 152563 CCACCAGCTAAGAACCGCCATCCATCGCCAACTACCAAATCGAGCAAAAGTTTCCAATCT 152622 Query 256 GT 257 || Sbjct 152623 GT 152624 >seq377 Length=315890 Score = 75.2 bits (82), Expect = 2e-11 Identities = 87/110 (79%), Gaps = 13/110 (12%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATC----GGAATTAACCAGACAAATCACTCCACCAACTAAGAACG 211 ||| || | | ||||||| ||||| ||||||| |||| ||| |||| ||||||||| Sbjct 56246 AAGTTCGCCTCCGTTATCTTGCGGAAT--ACCAGACCAATCGCTC-ACCA-CTAAGAACG 56191 Query 212 GCCATGCACCACCACCCATAGAATCAAGAAAGAGCT---ATCAATCTGTC 258 |||||||||||||| ||| | |||| || ||||||| |||||||||| Sbjct 56190 GCCATGCACCACCAACCACA-AATCGAG-AAGAGCTCTCCTCAATCTGTC 56143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796617468807