Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq4099 190 3e-46
seq584 181 2e-43
seq1069 167 4e-39
seq982 104 4e-20
seq377 75.2 2e-11
>seq4099
Length=38631
Score = 190 bits (210), Expect = 3e-46
Identities = 192/243 (79%), Gaps = 5/243 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| |||||||||||||| |||| | |||||||||||||||||||||||||||| || |||
Sbjct 13614 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 13672
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCG 135
| || | |||| | || | ||||||||||||| || | | | | ||
Sbjct 13673 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGT-AGACTGGACTTGAAAATCC 13730
Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195
| | |||||||||||| || |||||| ||||||||||||| || |||||||||| ||
Sbjct 13731 A-GCCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAAGCAGACAAATCGCT 13789
Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|||||||||||||| ||||||||||||||| ||| |||| |||||||||| |||||||
Sbjct 13790 CCACCAACTAAGAATGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCT 13849
Query 256 GTC 258
|||
Sbjct 13850 GTC 13852
>seq584
Length=263741
Score = 181 bits (200), Expect = 2e-43
Identities = 191/244 (78%), Gaps = 7/244 (3%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||||| |||||||| |||| | |||||||||||||||||||||||||||| || |||
Sbjct 155988 CATTGTAGAGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 156046
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC--ATAGTC 134
| || | |||| | || | ||||||||||||| || | ||| | | ||
Sbjct 156047 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGT-AGACTG-AACTTGAAAATC 156103
Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194
| | |||||||||||| || | |||| ||||||| ||||| ||||||||||||| |
Sbjct 156104 CA-GCCACTATTTAGCAGGCTAGAGCCTCGCTCGTTATGGGAATAAACCAGACAAATCGC 156162
Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||| ||||||||||||||||||||||||| ||| |||| |||||| ||| ||||||
Sbjct 156163 TCCACTAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGTGCTTTCAATC 156222
Query 255 TGTC 258
||||
Sbjct 156223 TGTC 156226
>seq1069
Length=185886
Score = 167 bits (184), Expect = 4e-39
Identities = 187/245 (76%), Gaps = 15/245 (6%)
Strand=Plus/Minus
Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79
|||||||||||||| |||| | |||||||||||||||||||||||||||| || |||| |
Sbjct 179282 TGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCAATC 179224
Query 80 TT------CCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133
| | | | || | || | ||||| ||||||| || | | | |
Sbjct 179223 TCGTGCGGCTAATCCCTTTACACCGCTTATCCCTTTAAGAAGGACTGGACTTA--AAAAT 179166
Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| | | |||||||||||| ||||| | |||||||||||| |||||||||||||
Sbjct 179165 CCA-GCCACTATTTAGCAGGA----GTCTCAT-CGTTATCGGAATAAACCAGACAAATCG 179112
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||
Sbjct 179111 CTCCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAAT 179052
Query 254 CTGTC 258
|||||
Sbjct 179051 CTGTC 179047
>seq982
Length=194932
Score = 104 bits (114), Expect = 4e-20
Identities = 175/242 (72%), Gaps = 11/242 (5%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| |||| ||||||||| |||| | ||||||||||||||||||||| |||||| || |||
Sbjct 152393 CACTGTAACGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGAC-TGTTATCGC-TCA 152450
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCG 135
| || | | || ||| || | | ||| ||||||| || | | | | ||
Sbjct 152451 ATCT--CGT--GC-GGACACCGCTTATTCCTTTAAGAAGT-AGACTGGACTTGAGAATCC 152504
Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195
| ||||||||||| | || ||||| ||||||||||||| || ||||||||||
Sbjct 152505 AACCA-CTATTTAGCAGCTAGAG-TCTCGATCGTTATCGGAATGAATCAGACAAATCGTA 152562
Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255
|||||| |||||||| ||||| || | ||| | | |||| || || || | ||||||
Sbjct 152563 CCACCAGCTAAGAACCGCCATCCATCGCCAACTACCAAATCGAGCAAAAGTTTCCAATCT 152622
Query 256 GT 257
||
Sbjct 152623 GT 152624
>seq377
Length=315890
Score = 75.2 bits (82), Expect = 2e-11
Identities = 87/110 (79%), Gaps = 13/110 (12%)
Strand=Plus/Minus
Query 156 AAGGTCTCGTTCGTTATC----GGAATTAACCAGACAAATCACTCCACCAACTAAGAACG 211
||| || | | ||||||| ||||| ||||||| |||| ||| |||| |||||||||
Sbjct 56246 AAGTTCGCCTCCGTTATCTTGCGGAAT--ACCAGACCAATCGCTC-ACCA-CTAAGAACG 56191
Query 212 GCCATGCACCACCACCCATAGAATCAAGAAAGAGCT---ATCAATCTGTC 258
|||||||||||||| ||| | |||| || ||||||| ||||||||||
Sbjct 56190 GCCATGCACCACCAACCACA-AATCGAG-AAGAGCTCTCCTCAATCTGTC 56143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796617468807
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |