Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq4099 167 4e-39
seq584 167 4e-39
seq1069 132 9e-29
seq982 107 4e-21
seq900 105 1e-20
>seq4099
Length=38631
Score = 167 bits (184), Expect = 4e-39
Identities = 230/312 (74%), Gaps = 11/312 (4%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTC--GCCGGCTTCTT 77
||||||||| || |||||||||||| ||| | ||| | ||| | | ||||||
Sbjct 13761 GAGCGAGACTCTAGCCTGCTAAATAGT--GGCTGGATTTT-CAAGTCCAGTCTACTTCTT 13705
Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136
||||||| | ||| | ||||| || | ||||| | ||||||||||||||||||||
Sbjct 13704 AGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCC 13647
Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196
|||||||| | |||| |||||||||||||| || ||| || || | | || |
Sbjct 13646 TTAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCA--GATGGCCTATCCGTTA 13589
Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256
||| |||| | ||| | | ||||||| |||| | ||||||| | |||| |||||
Sbjct 13588 CCGAAAGGCACTGATAAACCGTTGAAACTCTTCCGTG-TCGGGATAGGGAATTGTAATTA 13530
Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316
|| | ||| ||| |||||| ||||||||| | | ||||||||| | || ||||||||| |
Sbjct 13529 TTTCCCTTGAACAAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTTC 13470
Query 317 CTGCCCTTTGTA 328
||||| ||||||
Sbjct 13469 CTGCCATTTGTA 13458
>seq584
Length=263741
Score = 167 bits (184), Expect = 4e-39
Identities = 228/311 (73%), Gaps = 8/311 (3%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTC-GCCGGCTTCTTA 78
||||||| | || |||||||||||| ||| | ||| | || | | |||||||
Sbjct 156135 GAGCGAGGCTCTAGCCTGCTAAATAGT--GGCTGGATTTTCAAGTTCAGTCTACTTCTTA 156078
Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137
|||||| | ||| | ||||| || | ||||| | |||||||||||||||||||||
Sbjct 156077 GAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCCT 156020
Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197
||||||| | |||| |||||||| ||||| || ||| || | | ||| | | ||
Sbjct 156019 TAGATGTCCGGGGCTGCACGCGCTCTACAATGGAAGAATCAGCTGGCCTATC--CATTGC 155962
Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257
|| |||| | ||||| | | ||||||| |||| ||||||| | |||| ||||||
Sbjct 155961 CGAAAGGCATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTGTAATTAT 155902
Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317
| | ||| || ||| ||| |||||||| | | ||||||||| | || ||||||||||||
Sbjct 155901 TACCCTTGAAGGAGAAATTTCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTCCC 155842
Query 318 TGCCCTTTGTA 328
|||| ||||||
Sbjct 155841 TGCCATTTGTA 155831
>seq1069
Length=185886
Score = 132 bits (146), Expect = 9e-29
Identities = 165/223 (74%), Gaps = 5/223 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| | |||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 179223 AGATTGAG-CGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 179281
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| | ||| | ||| | | | || | ||| ||||| | ||||| | | |||||
Sbjct 179282 A---ATAGAAGAATCGATTGCCTATCCATTGCC-GAAGGCATTGGTAAACCGTTGAAACT 179337
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| ||| | |||| | | | ||||||| | ||| ||| |||||| |||||||||
Sbjct 179338 CTTCCGTAACCCGAATAGGGAAACGTAATTATTTCCCTTGAACAAGGAATTCCTAGTAAG 179397
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | |||| |||| | | ||||||||||||||| ||||||
Sbjct 179398 TGTGAGTCACCAGCTCATGCAGATTACGTCCCTGCCATTTGTA 179440
>seq982
Length=194932
Score = 107 bits (118), Expect = 4e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| | ||||||| |||||||||||||||||||| | |||| ||||||||| |||
Sbjct 152454 AGATTGAG-CGATAACAG-TCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGTTAC 152397
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| || ||| || | | |||| | |||| |||| | |||| || | |||||
Sbjct 152396 AGTGGAAGAATCAGCTTGCCTATCA---TTGCCGAAAGG-CATTGTAAACTGTTGAAACT 152341
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| |||| |||||| | |||| ||||||| |||| | |||||||| |||||||||
Sbjct 152340 CTTCCGTGACCGGGATAAGGAATTGTAATTATTTATCTTGAGCGAGGAATTCCTAGTAAG 152281
Query 286 CGCGTGTCATCAGC 299
| | |||||||
Sbjct 152280 TGTGATACATCAGC 152267
>seq900
Length=207650
Score = 105 bits (116), Expect = 1e-20
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280
||||||| ||| ||||||| | |||| ||||||| | ||| |||||||||| ||||
Sbjct 186486 AAACTCTTCTGTGACCGGGATAGGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCTA 186427
Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||| | | ||||||||| | || |||||||||||||||| ||||||
Sbjct 186426 GTAAGTGTGAGTCATCAGCTCACGCTGATTACGTCCCTGCCATTTGTA 186379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946976015616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |