Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4099 167 4e-39 seq584 167 4e-39 seq1069 132 9e-29 seq982 107 4e-21 seq900 105 1e-20 >seq4099 Length=38631 Score = 167 bits (184), Expect = 4e-39 Identities = 230/312 (74%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTC--GCCGGCTTCTT 77 ||||||||| || |||||||||||| ||| | ||| | ||| | | |||||| Sbjct 13761 GAGCGAGACTCTAGCCTGCTAAATAGT--GGCTGGATTTT-CAAGTCCAGTCTACTTCTT 13705 Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||| | ||| | ||||| || | ||||| | |||||||||||||||||||| Sbjct 13704 AGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCC 13647 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||| | |||| |||||||||||||| || ||| || || | | || | Sbjct 13646 TTAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCA--GATGGCCTATCCGTTA 13589 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| |||| | ||| | | ||||||| |||| | ||||||| | |||| ||||| Sbjct 13588 CCGAAAGGCACTGATAAACCGTTGAAACTCTTCCGTG-TCGGGATAGGGAATTGTAATTA 13530 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || | ||| ||| |||||| ||||||||| | | ||||||||| | || ||||||||| | Sbjct 13529 TTTCCCTTGAACAAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTTC 13470 Query 317 CTGCCCTTTGTA 328 ||||| |||||| Sbjct 13469 CTGCCATTTGTA 13458 >seq584 Length=263741 Score = 167 bits (184), Expect = 4e-39 Identities = 228/311 (73%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTC-GCCGGCTTCTTA 78 ||||||| | || |||||||||||| ||| | ||| | || | | ||||||| Sbjct 156135 GAGCGAGGCTCTAGCCTGCTAAATAGT--GGCTGGATTTTCAAGTTCAGTCTACTTCTTA 156078 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 |||||| | ||| | ||||| || | ||||| | ||||||||||||||||||||| Sbjct 156077 GAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCCT 156020 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| | |||| |||||||| ||||| || ||| || | | ||| | | || Sbjct 156019 TAGATGTCCGGGGCTGCACGCGCTCTACAATGGAAGAATCAGCTGGCCTATC--CATTGC 155962 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || |||| | ||||| | | ||||||| |||| ||||||| | |||| |||||| Sbjct 155961 CGAAAGGCATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTGTAATTAT 155902 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 | | ||| || ||| ||| |||||||| | | ||||||||| | || |||||||||||| Sbjct 155901 TACCCTTGAAGGAGAAATTTCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTCCC 155842 Query 318 TGCCCTTTGTA 328 |||| |||||| Sbjct 155841 TGCCATTTGTA 155831 >seq1069 Length=185886 Score = 132 bits (146), Expect = 9e-29 Identities = 165/223 (74%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| | |||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 179223 AGATTGAG-CGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 179281 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | | ||| | ||| | | | || | ||| ||||| | ||||| | | ||||| Sbjct 179282 A---ATAGAAGAATCGATTGCCTATCCATTGCC-GAAGGCATTGGTAAACCGTTGAAACT 179337 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || ||| | |||| | | | ||||||| | ||| ||| |||||| ||||||||| Sbjct 179338 CTTCCGTAACCCGAATAGGGAAACGTAATTATTTCCCTTGAACAAGGAATTCCTAGTAAG 179397 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | |||| |||| | | ||||||||||||||| |||||| Sbjct 179398 TGTGAGTCACCAGCTCATGCAGATTACGTCCCTGCCATTTGTA 179440 >seq982 Length=194932 Score = 107 bits (118), Expect = 4e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| | ||||||| |||||||||||||||||||| | |||| ||||||||| ||| Sbjct 152454 AGATTGAG-CGATAACAG-TCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGTTAC 152397 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || ||| || | | |||| | |||| |||| | |||| || | ||||| Sbjct 152396 AGTGGAAGAATCAGCTTGCCTATCA---TTGCCGAAAGG-CATTGTAAACTGTTGAAACT 152341 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || |||| |||||| | |||| ||||||| |||| | |||||||| ||||||||| Sbjct 152340 CTTCCGTGACCGGGATAAGGAATTGTAATTATTTATCTTGAGCGAGGAATTCCTAGTAAG 152281 Query 286 CGCGTGTCATCAGC 299 | | ||||||| Sbjct 152280 TGTGATACATCAGC 152267 >seq900 Length=207650 Score = 105 bits (116), Expect = 1e-20 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 ||||||| ||| ||||||| | |||| ||||||| | ||| |||||||||| |||| Sbjct 186486 AAACTCTTCTGTGACCGGGATAGGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCTA 186427 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | | ||||||||| | || |||||||||||||||| |||||| Sbjct 186426 GTAAGTGTGAGTCATCAGCTCACGCTGATTACGTCCCTGCCATTTGTA 186379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946976015616