Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1691 86.0 1e-14
seq206 86.0 1e-14
seq982 82.4 1e-13
seq1777 78.8 2e-12
seq1017 78.8 2e-12
seq163 77.0 5e-12
>seq1691
Length=128987
Score = 86.0 bits (94), Expect = 1e-14
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||||||| | |||||| || || | || | | || |
Sbjct 17669 GTACGAGAGGAACAGCAGG-TTCAGAA-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 17612
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 17611 GGTCCGAAGCTACCATCTGGGGGATTATGACTGAACGCCTCTAACTCAGAATCC 17558
>seq206
Length=388919
Score = 86.0 bits (94), Expect = 1e-14
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | |||||| | |||||| || || | || | | || |
Sbjct 148269 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 148326
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 148327 GGTCCGAAGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 148380
>seq982
Length=194932
Score = 82.4 bits (90), Expect = 1e-13
Identities = 88/114 (77%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | |||||| | |||||| || || | || | | || |
Sbjct 154626 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 154569
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 154568 GGTCCGAAGCTACCATCTGGGGGATTATGAATGAACGCCTCTAAGTCAGAATCC 154515
>seq1777
Length=122891
Score = 78.8 bits (86), Expect = 2e-12
Identities = 88/114 (77%), Gaps = 3/114 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | |||||| | |||||| || || | || ||| || |
Sbjct 98401 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCAGTCAAT 98344
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct 98343 GGTCCGAAGCTACCATCTGGAGGATTATCACTGAACGCCTCT-AGTCAGAATCC 98291
>seq1017
Length=190417
Score = 78.8 bits (86), Expect = 2e-12
Identities = 88/114 (77%), Gaps = 3/114 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | |||||| | |||||| || || | || | | || |
Sbjct 124428 GTACGAGAGGAACAGCAGT-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 124371
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 124370 GGTCCGAAGCTACCATCTGG-GGATTATGATTGAACGCCTCTAAGTCAGAATCC 124318
>seq163
Length=418455
Score = 77.0 bits (84), Expect = 5e-12
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 151886 CGAAGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 151837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819012337408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |