Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1691 86.0 1e-14 seq206 86.0 1e-14 seq982 82.4 1e-13 seq1777 78.8 2e-12 seq1017 78.8 2e-12 seq163 77.0 5e-12 >seq1691 Length=128987 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||||||| | |||||| || || | || | | || | Sbjct 17669 GTACGAGAGGAACAGCAGG-TTCAGAA-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 17612 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 17611 GGTCCGAAGCTACCATCTGGGGGATTATGACTGAACGCCTCTAACTCAGAATCC 17558 >seq206 Length=388919 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || | | || | Sbjct 148269 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 148326 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 148327 GGTCCGAAGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 148380 >seq982 Length=194932 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || | | || | Sbjct 154626 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 154569 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 154568 GGTCCGAAGCTACCATCTGGGGGATTATGAATGAACGCCTCTAAGTCAGAATCC 154515 >seq1777 Length=122891 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || ||| || | Sbjct 98401 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCAGTCAAT 98344 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| ||||||| |||||||||||| ||||||||||| Sbjct 98343 GGTCCGAAGCTACCATCTGGAGGATTATCACTGAACGCCTCT-AGTCAGAATCC 98291 >seq1017 Length=190417 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || | | || | Sbjct 124428 GTACGAGAGGAACAGCAGT-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 124371 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 124370 GGTCCGAAGCTACCATCTGG-GGATTATGATTGAACGCCTCTAAGTCAGAATCC 124318 >seq163 Length=418455 Score = 77.0 bits (84), Expect = 5e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 151886 CGAAGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 151837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819012337408