Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1777 241 4e-61
seq345 233 6e-59
seq11681 232 2e-58
seq1017 221 4e-55
seq982 212 2e-52
seq695 123 8e-26
seq377 107 6e-21
seq1645 89.7 2e-15
seq746 87.8 5e-15
seq1027 80.6 8e-13
>seq1777
Length=122891
Score = 241 bits (266), Expect = 4e-61
Identities = 333/453 (74%), Gaps = 25/453 (6%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || ||| |||||||||||||
Sbjct 96739 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAGTTTCGCACCTGCTGCCTTCC 96798
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||||| | |||||||| |||| ||||||
Sbjct 96799 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGAAGTCGAACCCCTATTCTCCGTTA 96858
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| | |||||||||| | | || |||||||| | |||||||||||||| | ||
Sbjct 96859 CCCGTAGTAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 96916
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282
| | ||| ||| |||| | |||| | | |||||| || ||| ||| |
Sbjct 96917 TTCGGAATATCAGCGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACA 96973
Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340
|| |||||||| |||| ||| |||||||| | || ||||| | ||||| |||||
Sbjct 96974 GCACCCGAAGGTGATTGG--TTTGCTCTAATAATTGCA-CCCTTTCAAAGTCAAGGTTTC 97030
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA-AAT 399
| |||| ||||||||| ||||| || |||||||| ||| | | ||| |||
Sbjct 97031 GTTGCATATATTAGCTCCAGAATCGCCGTTGTTATCCA-ATAGGATG-----TTCAGAAT 97084
Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459
||| || | ||| | ||||||||| ||||||||||| || || |||| | | |
Sbjct 97085 AAATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCT-TA-AGAT------GAACTCG 97136
Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATAT 492
|||||||||||||||||||| | |||||||
Sbjct 97137 ACATGCATGGCTTAATCTTTAAACTGAGCATAT 97169
>seq345
Length=325726
Score = 233 bits (258), Expect = 6e-59
Identities = 296/401 (74%), Gaps = 16/401 (4%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || ||||||| |||
Sbjct 14573 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAGTTTCGCGCCT-------TCC 14521
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 14520 TTGGATGTGGTAGCCGTTTCTGAGGCTCCCTCTCCGGAATCGAACCCTTATTCTCCGTTA 14461
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| |||||||||| | | || |||||||| | |||||||||||||| | ||
Sbjct 14460 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 14403
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282
| | ||| ||| |||| | |||| | | |||||| || ||| ||| |
Sbjct 14402 TTCGGAATATCAGCGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACA 14346
Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341
|| |||||||| |||| ||| |||||||| | ||||| ||| ||||| |||||||
Sbjct 14345 GCACCCGAAGGTGATTGG--TTTGCTCTAATAATTGCACCCTTTCAAAAGTCAGGGTTTT 14288
Query 342 -TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400
| |||||||||||||| |||||| || | |||||||| | || | | ||||
Sbjct 14287 CTTGCATGTATTAGCTCCAGAATTGCCGCAGTTATCCAAAAAAATTGGACGTTCCGAATA 14228
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441
|| || | ||| | ||||||||| ||||||||||| || ||
Sbjct 14227 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCTTTA 14187
>seq11681
Length=1315
Score = 232 bits (256), Expect = 2e-58
Identities = 328/452 (73%), Gaps = 22/452 (5%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || |||||||||||||||||
Sbjct 520 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAATTTCGCGCCTGCTGCCTTCC 579
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||| ||| ||||||||| |||| ||||||
Sbjct 580 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCTGGAGTCGAACCCTTATTCTCCGTTA 639
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| |||| ||||| | | || ||||||| || ||||| |||||||| | |
Sbjct 640 CCCGTAATAACCACGGTAGACTAATAGACTACCAT--AAGGTTGACAGGGCAGACACATT 697
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282
| | ||| ||| |||| | |||| | | |||||| || || ||| |
Sbjct 698 TTCGGAATATCAGCGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCGGCAAACA 754
Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340
|| |||| ||| | || ||| |||||||| ||||| || ||||| ||||||
Sbjct 755 GCACCCGTAGGTGATAGG--TTTGCTCTAATAATAGCACCCTCTCAAAAGTCAGGGTTTC 812
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400
|| | |||||||||||| |||||| || | |||||||| ||| | | | | ||||
Sbjct 813 TTTGAATGTATTAGCTCCAGAATTGCCGCAGTTATCCA-ATAGGACG----TTCCGAATA 867
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
|| || | ||| | ||||||||| ||||||||||| || || | | |||| ||
Sbjct 868 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCTTTAGA-------TGAACTT-GA 919
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492
|||||||||||| |||||| | |||||||
Sbjct 920 CATGCATGGCTTTATCTTTAAACTGAGCATAT 951
>seq1017
Length=190417
Score = 221 bits (244), Expect = 4e-55
Identities = 332/457 (73%), Gaps = 31/457 (7%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || |||||||||||||||||
Sbjct 120702 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAATTTCGCGCCTGCTGCCTTCC 120761
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||| ||| ||||||||| | || ||||||
Sbjct 120762 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCTGGAGTCGAACCCTTA-TCTCCGTTA 120820
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG--AAATT 220
||||| |||| ||||| | | || ||||||| || ||||| ||||||| | |||
Sbjct 120821 CCCGTAATAACCACGGTAGACTAATAGACTACCAT--AAGGTTGACAGGGCAGACACATT 120878
Query 221 T---GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277
| |||| | ||| | | |||| | |||| | | |||||| || || |
Sbjct 120879 TTCGGAAT-ATCCAGC----GGACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCGGC 120931
Query 278 AAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG 336
|| ||| |||| ||| | || ||| |||||||| ||||| || ||||| ||
Sbjct 120932 AAACAGCACCCGTAGGTGATAGG--TTTGCTCTAATAATAGCACCCTCTCAAAAGTCAGG 120989
Query 337 GTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395
|||| || | |||||||||||| |||||| || | |||||||| ||| | | | |
Sbjct 120990 GTTTCTTTGAATGTATTAGCTCCAGAATTGCCGCAGTTATCCA-ATAGGACG----TTCC 121044
Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455
|||||| || | ||| | ||||||||| ||||||||||| | | |||| | ||
Sbjct 121045 GAATAAATGACATCTGCTCTAATGAGCCGTTCGCAGTTTC-TTCTTTAGA-----TGAAC 121098
Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492
|| |||||||||||||| |||||| | |||||||
Sbjct 121099 TT-GACATGCATGGCTTTATCTTTAAACTGAGCATAT 121134
>seq982
Length=194932
Score = 212 bits (234), Expect = 2e-52
Identities = 324/453 (72%), Gaps = 23/453 (5%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | | ||||| ||| | || |||||| ||| || |||||||| ||||||||
Sbjct 153360 TATTTTTAGCCACTATCTCATCTCTTCAAGATTGGATAAGTTTCGCGCCTG-TGCCTTCC 153418
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| ||||||||||| |||| | ||||||| |||| ||||||
Sbjct 153419 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTTCGGAGTTGAACCCTTATTCTCCGTTA 153478
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| ||||||||| || | || || ||||| | |||||||||||| | | ||
Sbjct 153479 CCCGTAATAACCATGGTATGCTAATAGACTGCCATC--AGGTTGATAGGGCATACACTTT 153536
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282
| ||| || |||| | |||| | | |||||| || ||| ||| |
Sbjct 153537 TTCGGGATATCAGAGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACA 153593
Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340
|| | |||||| |||| || |||||||| | ||||| ||| |||| ||||||
Sbjct 153594 GCACACGAAGGTGATTGG--TTCGCTCTAATAATTGCACCCTTTCAAAAGTTAGGGTTTC 153651
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400
|| |||||||||||||| |||||| | || |||||||| |||| | | ||||
Sbjct 153652 TTTGCATGTATTAGCTCCAGAATTGCGACAGTTATCCA-----ATAGGTCGTTCCGAATA 153706
Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460
|| || | ||| | ||||||||| |||||||||| || | |||| | | ||
Sbjct 153707 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTT--CTCTTGAGAT------GAGCTCGA 153758
Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATG 493
||||||||| | ||||||| | ||||||||
Sbjct 153759 CATGCATGGTTAAATCTTTAAACTGAGCATATG 153791
>seq695
Length=241121
Score = 123 bits (136), Expect = 8e-26
Identities = 96/114 (84%), Gaps = 4/114 (4%)
Strand=Plus/Minus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCT----TGGATGTGGTAGCCGTTTCTCAGG 127
|||||| ||| || ||||||| |||||| ||| |||||||||||||||||||| |||
Sbjct 164409 GATTGGATAAGTTTCGCGCCTACTGCCTCCCTCCCATGGATGTGGTAGCCGTTTCTAAGG 164350
Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|||||||||||| ||||||||| |||| |||||||| || |||||||||||
Sbjct 164349 CTCCCTCTCCGGTGTCGAACCCTTATTCTCCGTTACCTGTATTTACCATGGTAG 164296
>seq377
Length=315890
Score = 107 bits (118), Expect = 6e-21
Identities = 116/145 (80%), Gaps = 8/145 (6%)
Strand=Plus/Minus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC-CCTC 134
|| || ||| ||||||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 55192 GGATAGTTTCGGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAAGGTCACATC 55133
Query 135 -TCCGGAATCGAACCC-TAATTCCCCGTTACCCGTTGAT-ACCA-TGG-TAGGCCACTAT 189
|||||| |||||||| |||||| ||||||||||| | |||| ||| ||| | | ||
Sbjct 55132 TTCCGGAGTCGAACCCTTAATTCTCCGTTACCCGTAACTAACCAGTGGTTAGACTAATAG 55073
Query 190 CCTACCATCGAAAGTTGATAGGGCA 214
|||||||| | |||||| || ||
Sbjct 55072 ACTACCATC--AGGTTGATGGGACA 55050
>seq1645
Length=132906
Score = 89.7 bits (98), Expect = 2e-15
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
|| ||| ||| || || ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 76427 GACTGGATAAGTTTCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAGGGCTTC 76368
Query 132 CTCTCCGGA 140
|||||||||
Sbjct 76367 CTCTCCGGA 76359
>seq746
Length=231613
Score = 87.8 bits (96), Expect = 5e-15
Identities = 97/127 (76%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149
|||||||| |||| |||||||||||||| ||| | ||| ||| ||| | ||||||||
Sbjct 118150 CCTGCTGCTTTCCCTGGATGTGGTAGCCTTTTATAAGGTCTCCTTACCGTAGTCGAACCC 118209
Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209
| |||| |||||| || | ||| |||||| | | | || ||||||| | ||||| |
Sbjct 118210 TTATTCTTCGTTACACG-TAATAGCATGGTCGACTAATAGATTACCATC--AGGTTGACA 118266
Query 210 GGGCAGA 216
|||||||
Sbjct 118267 GGGCAGA 118273
>seq1027
Length=189403
Score = 80.6 bits (88), Expect = 8e-13
Identities = 162/233 (70%), Gaps = 18/233 (8%)
Strand=Plus/Minus
Query 262 GTTATTATGAATCACCAAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACAC 320
|||||| || ||| ||| | | |||||||| | ||||| | ||||||| | |||
Sbjct 106970 GTTATTCAGAGTCAGCAAACAACACCCGAAGGTGATGGGTTTGCT--CTAATAATTGCAC 106913
Query 321 CCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379
| ||| ||||| |||||| | ||||||||| ||| || ||| || | |||||||
Sbjct 106912 CTTTTCAAAAGTCAGGGTTTCTCTGCATGTATTGACTCCAGTATTGCCGCAGTTATCCCA 106853
Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439
||| | | | | ||||| || | | | | ||||||||| ||||||||||| |
Sbjct 106852 -TAGGACGTTCCGG----ATAAATGACATCAGCTCTAATGAGCCGTTCGCAGTTTCTTT- 106799
Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492
| | | |||| ||||||||||||||||||||| | || |||||||
Sbjct 106798 ------TCGGATGAACTT-GACATGCATGGCTTAATCTTT-AAACTAGCATAT 106754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510042835712
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