Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1777 241 4e-61 seq345 233 6e-59 seq11681 232 2e-58 seq1017 221 4e-55 seq982 212 2e-52 seq695 123 8e-26 seq377 107 6e-21 seq1645 89.7 2e-15 seq746 87.8 5e-15 seq1027 80.6 8e-13 >seq1777 Length=122891 Score = 241 bits (266), Expect = 4e-61 Identities = 333/453 (74%), Gaps = 25/453 (6%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||| ||||||||||||| Sbjct 96739 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAGTTTCGCACCTGCTGCCTTCC 96798 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||| | |||||||| |||| |||||| Sbjct 96799 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGAAGTCGAACCCCTATTCTCCGTTA 96858 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | |||||||||| | | || |||||||| | |||||||||||||| | || Sbjct 96859 CCCGTAGTAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 96916 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 | | ||| ||| |||| | |||| | | |||||| || ||| ||| | Sbjct 96917 TTCGGAATATCAGCGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACA 96973 Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 || |||||||| |||| ||| |||||||| | || ||||| | ||||| ||||| Sbjct 96974 GCACCCGAAGGTGATTGG--TTTGCTCTAATAATTGCA-CCCTTTCAAAGTCAAGGTTTC 97030 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA-AAT 399 | |||| ||||||||| ||||| || |||||||| ||| | | ||| ||| Sbjct 97031 GTTGCATATATTAGCTCCAGAATCGCCGTTGTTATCCA-ATAGGATG-----TTCAGAAT 97084 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| || | ||| | ||||||||| ||||||||||| || || |||| | | | Sbjct 97085 AAATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCT-TA-AGAT------GAACTCG 97136 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||||||||||||||| | ||||||| Sbjct 97137 ACATGCATGGCTTAATCTTTAAACTGAGCATAT 97169 >seq345 Length=325726 Score = 233 bits (258), Expect = 6e-59 Identities = 296/401 (74%), Gaps = 16/401 (4%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||| ||| Sbjct 14573 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAGTTTCGCGCCT-------TCC 14521 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| Sbjct 14520 TTGGATGTGGTAGCCGTTTCTGAGGCTCCCTCTCCGGAATCGAACCCTTATTCTCCGTTA 14461 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || |||||||| | |||||||||||||| | || Sbjct 14460 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 14403 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 | | ||| ||| |||| | |||| | | |||||| || ||| ||| | Sbjct 14402 TTCGGAATATCAGCGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACA 14346 Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341 || |||||||| |||| ||| |||||||| | ||||| ||| ||||| ||||||| Sbjct 14345 GCACCCGAAGGTGATTGG--TTTGCTCTAATAATTGCACCCTTTCAAAAGTCAGGGTTTT 14288 Query 342 -TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 | |||||||||||||| |||||| || | |||||||| | || | | |||| Sbjct 14287 CTTGCATGTATTAGCTCCAGAATTGCCGCAGTTATCCAAAAAAATTGGACGTTCCGAATA 14228 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 || || | ||| | ||||||||| ||||||||||| || || Sbjct 14227 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCTTTA 14187 >seq11681 Length=1315 Score = 232 bits (256), Expect = 2e-58 Identities = 328/452 (73%), Gaps = 22/452 (5%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 520 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAATTTCGCGCCTGCTGCCTTCC 579 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||| ||| ||||||||| |||| |||||| Sbjct 580 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCTGGAGTCGAACCCTTATTCTCCGTTA 639 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||| ||||| | | || ||||||| || ||||| |||||||| | | Sbjct 640 CCCGTAATAACCACGGTAGACTAATAGACTACCAT--AAGGTTGACAGGGCAGACACATT 697 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 | | ||| ||| |||| | |||| | | |||||| || || ||| | Sbjct 698 TTCGGAATATCAGCGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCGGCAAACA 754 Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 || |||| ||| | || ||| |||||||| ||||| || ||||| |||||| Sbjct 755 GCACCCGTAGGTGATAGG--TTTGCTCTAATAATAGCACCCTCTCAAAAGTCAGGGTTTC 812 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || | |||||||||||| |||||| || | |||||||| ||| | | | | |||| Sbjct 813 TTTGAATGTATTAGCTCCAGAATTGCCGCAGTTATCCA-ATAGGACG----TTCCGAATA 867 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || || | ||| | ||||||||| ||||||||||| || || | | |||| || Sbjct 868 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCTTTAGA-------TGAACTT-GA 919 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||||||| |||||| | ||||||| Sbjct 920 CATGCATGGCTTTATCTTTAAACTGAGCATAT 951 >seq1017 Length=190417 Score = 221 bits (244), Expect = 4e-55 Identities = 332/457 (73%), Gaps = 31/457 (7%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 120702 TATTTTTAGTCACTATCTCATCTCTTCAAGATTGGATAAATTTCGCGCCTGCTGCCTTCC 120761 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||| ||| ||||||||| | || |||||| Sbjct 120762 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCTGGAGTCGAACCCTTA-TCTCCGTTA 120820 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG--AAATT 220 ||||| |||| ||||| | | || ||||||| || ||||| ||||||| | ||| Sbjct 120821 CCCGTAATAACCACGGTAGACTAATAGACTACCAT--AAGGTTGACAGGGCAGACACATT 120878 Query 221 T---GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277 | |||| | ||| | | |||| | |||| | | |||||| || || | Sbjct 120879 TTCGGAAT-ATCCAGC----GGACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCGGC 120931 Query 278 AAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG 336 || ||| |||| ||| | || ||| |||||||| ||||| || ||||| || Sbjct 120932 AAACAGCACCCGTAGGTGATAGG--TTTGCTCTAATAATAGCACCCTCTCAAAAGTCAGG 120989 Query 337 GTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395 |||| || | |||||||||||| |||||| || | |||||||| ||| | | | | Sbjct 120990 GTTTCTTTGAATGTATTAGCTCCAGAATTGCCGCAGTTATCCA-ATAGGACG----TTCC 121044 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 |||||| || | ||| | ||||||||| ||||||||||| | | |||| | || Sbjct 121045 GAATAAATGACATCTGCTCTAATGAGCCGTTCGCAGTTTC-TTCTTTAGA-----TGAAC 121098 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 || |||||||||||||| |||||| | ||||||| Sbjct 121099 TT-GACATGCATGGCTTTATCTTTAAACTGAGCATAT 121134 >seq982 Length=194932 Score = 212 bits (234), Expect = 2e-52 Identities = 324/453 (72%), Gaps = 23/453 (5%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | | ||||| ||| | || |||||| ||| || |||||||| |||||||| Sbjct 153360 TATTTTTAGCCACTATCTCATCTCTTCAAGATTGGATAAGTTTCGCGCCTG-TGCCTTCC 153418 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| ||||||||||| |||| | ||||||| |||| |||||| Sbjct 153419 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTTCGGAGTTGAACCCTTATTCTCCGTTA 153478 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| ||||||||| || | || || ||||| | |||||||||||| | | || Sbjct 153479 CCCGTAATAACCATGGTATGCTAATAGACTGCCATC--AGGTTGATAGGGCATACACTTT 153536 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 | ||| || |||| | |||| | | |||||| || ||| ||| | Sbjct 153537 TTCGGGATATCAGAGG-ACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACA 153593 Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 || | |||||| |||| || |||||||| | ||||| ||| |||| |||||| Sbjct 153594 GCACACGAAGGTGATTGG--TTCGCTCTAATAATTGCACCCTTTCAAAAGTTAGGGTTTC 153651 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || |||||||||||||| |||||| | || |||||||| |||| | | |||| Sbjct 153652 TTTGCATGTATTAGCTCCAGAATTGCGACAGTTATCCA-----ATAGGTCGTTCCGAATA 153706 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || || | ||| | ||||||||| |||||||||| || | |||| | | || Sbjct 153707 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTT--CTCTTGAGAT------GAGCTCGA 153758 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATG 493 ||||||||| | ||||||| | |||||||| Sbjct 153759 CATGCATGGTTAAATCTTTAAACTGAGCATATG 153791 >seq695 Length=241121 Score = 123 bits (136), Expect = 8e-26 Identities = 96/114 (84%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCT----TGGATGTGGTAGCCGTTTCTCAGG 127 |||||| ||| || ||||||| |||||| ||| |||||||||||||||||||| ||| Sbjct 164409 GATTGGATAAGTTTCGCGCCTACTGCCTCCCTCCCATGGATGTGGTAGCCGTTTCTAAGG 164350 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||||| ||||||||| |||| |||||||| || ||||||||||| Sbjct 164349 CTCCCTCTCCGGTGTCGAACCCTTATTCTCCGTTACCTGTATTTACCATGGTAG 164296 >seq377 Length=315890 Score = 107 bits (118), Expect = 6e-21 Identities = 116/145 (80%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC-CCTC 134 || || ||| ||||||||||||||||||||||||||||||||||||| | | || | || Sbjct 55192 GGATAGTTTCGGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAAGGTCACATC 55133 Query 135 -TCCGGAATCGAACCC-TAATTCCCCGTTACCCGTTGAT-ACCA-TGG-TAGGCCACTAT 189 |||||| |||||||| |||||| ||||||||||| | |||| ||| ||| | | || Sbjct 55132 TTCCGGAGTCGAACCCTTAATTCTCCGTTACCCGTAACTAACCAGTGGTTAGACTAATAG 55073 Query 190 CCTACCATCGAAAGTTGATAGGGCA 214 |||||||| | |||||| || || Sbjct 55072 ACTACCATC--AGGTTGATGGGACA 55050 >seq1645 Length=132906 Score = 89.7 bits (98), Expect = 2e-15 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 || ||| ||| || || ||||||||||||||||||||||||||||||||||| |||| | Sbjct 76427 GACTGGATAAGTTTCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAGGGCTTC 76368 Query 132 CTCTCCGGA 140 ||||||||| Sbjct 76367 CTCTCCGGA 76359 >seq746 Length=231613 Score = 87.8 bits (96), Expect = 5e-15 Identities = 97/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||| |||| |||||||||||||| ||| | ||| ||| ||| | |||||||| Sbjct 118150 CCTGCTGCTTTCCCTGGATGTGGTAGCCTTTTATAAGGTCTCCTTACCGTAGTCGAACCC 118209 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 | |||| |||||| || | ||| |||||| | | | || ||||||| | ||||| | Sbjct 118210 TTATTCTTCGTTACACG-TAATAGCATGGTCGACTAATAGATTACCATC--AGGTTGACA 118266 Query 210 GGGCAGA 216 ||||||| Sbjct 118267 GGGCAGA 118273 >seq1027 Length=189403 Score = 80.6 bits (88), Expect = 8e-13 Identities = 162/233 (70%), Gaps = 18/233 (8%) Strand=Plus/Minus Query 262 GTTATTATGAATCACCAAGGAGC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACAC 320 |||||| || ||| ||| | | |||||||| | ||||| | ||||||| | ||| Sbjct 106970 GTTATTCAGAGTCAGCAAACAACACCCGAAGGTGATGGGTTTGCT--CTAATAATTGCAC 106913 Query 321 CCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 | ||| ||||| |||||| | ||||||||| ||| || ||| || | ||||||| Sbjct 106912 CTTTTCAAAAGTCAGGGTTTCTCTGCATGTATTGACTCCAGTATTGCCGCAGTTATCCCA 106853 Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 ||| | | | | ||||| || | | | | ||||||||| ||||||||||| | Sbjct 106852 -TAGGACGTTCCGG----ATAAATGACATCAGCTCTAATGAGCCGTTCGCAGTTTCTTT- 106799 Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 | | | |||| ||||||||||||||||||||| | || ||||||| Sbjct 106798 ------TCGGATGAACTT-GACATGCATGGCTTAATCTTT-AAACTAGCATAT 106754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510042835712