Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq3 150 1e-31
>seq3
Length=1029188
Score = 150 bits (166), Expect = 1e-31
Identities = 217/305 (71%), Gaps = 1/305 (0%)
Strand=Plus/Plus
Query 66417 AGTCGAG-GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475
|||||| | ||||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 36947 AGTCGAACGTACTCAAAGATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCT 37006
Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATC 66535
||| || || |||||||| || || || ||| |||||| ||||||| | ||||
Sbjct 37007 GGACGCTTATTTCCGCCTTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATC 37066
Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATA 66595
|| | || ||||| || |||| || |||||| | || | || || || || ||
Sbjct 37067 GGGATAAGACCGTTGGAGGTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGATT 37126
Query 66596 TCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACT 66655
| ||| || ||||| ||||| ||||| || |||||||||| |||||| | ||
Sbjct 37127 TTGTGCACGTTCAGGCCAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGC 37186
Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715
|| | | ||||| | || |||||| | || ||||| ||| |||| || |||
Sbjct 37187 GTGTCGTAGATGCCCGCGATCGAGTCATCGGCCATTGTCAGCAGGAAGCACGATGACAGT 37246
Query 66716 TGGGG 66720
|||||
Sbjct 37247 TGGGG 37251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397453421772080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |