Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 150 1e-31 >seq3 Length=1029188 Score = 150 bits (166), Expect = 1e-31 Identities = 217/305 (71%), Gaps = 1/305 (0%) Strand=Plus/Plus Query 66417 AGTCGAG-GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 |||||| | ||||||||||||| |||||||| |||||||||||||||||||||| || Sbjct 36947 AGTCGAACGTACTCAAAGATGTCCGCATGCCACGGTTCCAGGTAGATGGCGAACGCTCCT 37006 Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATC 66535 ||| || || |||||||| || || || ||| |||||| ||||||| | |||| Sbjct 37007 GGACGCTTATTTCCGCCTTGGTCCACATATCGTGCGGTGTTGTTGTAGACACGAAGCATC 37066 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATA 66595 || | || ||||| || |||| || |||||| | || | || || || || || Sbjct 37067 GGGATAAGACCGTTGGAGGTGCCGTTCGTGCCGGCAATCAGTGAACCAGTAGCGCGGATT 37126 Query 66596 TCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACT 66655 | ||| || ||||| ||||| ||||| || |||||||||| |||||| | || Sbjct 37127 TTGTGCACGTTCAGGCCAATTCCACCAGCGCTCTTCGAGATCAGAGCACATTGTTTCAGC 37186 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715 || | | ||||| | || |||||| | || ||||| ||| |||| || ||| Sbjct 37187 GTGTCGTAGATGCCCGCGATCGAGTCATCGGCCATTGTCAGCAGGAAGCACGATGACAGT 37246 Query 66716 TGGGG 66720 ||||| Sbjct 37247 TGGGG 37251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453421772080