Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_028482.1 Length=11877 Score E Sequences producing significant alignments: (Bits) Value seq2126 104 2e-18 seq4011 89.7 4e-14 seq716 89.7 4e-14 >seq2126 Length=104255 Score = 104 bits (114), Expect = 2e-18 Identities = 186/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 1484 GACTACTGCTCGTATACCTGCTTCACCCTACGTCAGCTCTA-GACCATGTGAATTACATT 1542 |||| || || | ||| || ||| | || | ||||| | |||||||| |||| ||| Sbjct 101851 GACTCCTCCTAGCATATCTTCTTAATCCGGCC-CAGCTGCATGACCATGTCGATTATATT 101909 Query 1543 GAACAGTATTGTGAATCCTCGACTCTGGATGAGTTGATGAACTATCTGGTAATCAGGATA 1602 | ||||| | || |||| || || ||||||||| ||||||| |||||| | || Sbjct 101910 AATAAGTATGACCAGTCGACGACACTAGAGGAGTTGATGGACTATCTCGTAATCCGTGTA 101969 Query 1603 GTGCCGAAGGAAAAAGAGCACAAAATAGATTTCAGAGGATTCGGATGCAAGACGTACGAG 1662 || | ||||| || |||| ||| || | | | || || ||||||||||| ||| Sbjct 101970 GTTCAAAAGGAGAAGGAGCTCAAGATTCAATATCGCGGGTTTGGATGCAAGACCATCGAA 102029 Query 1663 GATAGGCTGCGATGTCTAGCCCAGGAGAAGGCTGTCATGCAATATTTAGATTTATATAGT 1722 ||||||| | | || | || |||||| || |||| |||| | ||| |||| Sbjct 102030 GATAGGCACAGGTCACTGGTTCAAGAGAAGAATGCGATGCGATATCTGGATGAATATTCA 102089 Query 1723 GATGAGCAAGCCATGACCCTGTCGGAGCT 1751 | ||||||||| |||||| | || ||||| Sbjct 102090 GGTGAGCAAGCAATGACCTTATCTGAGCT 102118 >seq4011 Length=40498 Score = 89.7 bits (98), Expect = 4e-14 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 1525 GACCATGTGAATTACATTGAACAGTATTGTGAATCCTCGACTCTGGATGAGTTGATGAAC 1584 |||||||| |||||||| || || | | | || |||| | || ||| ||||| || Sbjct 13557 GACCATGTCGATTACATTAAAATGTGTGATCAGTCGACGACATTAGAGGAGCTGATGGAC 13498 Query 1585 TATCTGGTAATCAGGATAGTGCCGAAGGAAAAAGAGCACAAAATAGATTTCAGAGGATTC 1644 ||||| |||||| || |||| || ||||| || ||| |||| | | | | || || Sbjct 13497 TATCTCGTAATCCGGGTAGTTCCAAAGGAGAAGGAGATCAAAGTTCAATATCGCGGGTTT 13438 Query 1645 GGATGCAAGACGTACGAGGATAGGCTGCGATGTCTAGCCCAGGAGAAGGCTGTCATGCAA 1704 ||| |||| || || || |||| ||| | || || |||||| || |||| | Sbjct 13437 GGACGCAACACCATGGAAGACAGGCACAGATCATTGGCTCAAGAGAAGAATGCTATGCGA 13378 Query 1705 TATTTAGATTTATATAGTGATGAGCAAGCCATGACCCTGTCGGAGCT 1751 | | | ||| |||| ||||||||||| |||||| | || ||||| Sbjct 13377 TTTCTGGATGAATATTCAGATGAGCAAGCAATGACCTTATCTGAGCT 13331 >seq716 Length=237629 Score = 89.7 bits (98), Expect = 4e-14 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 1525 GACCATGTGAATTACATTGAACAGTATTGTGAATCCTCGACTCTGGATGAGTTGATGAAC 1584 ||||||||| | ||||| || ||||| || || | ||||| || ||| ||||| || Sbjct 83237 GACCATGTGGACTACATCAAAAAGTATGGTCGCTCACCAACTCTTGAAGAGCTGATGGAC 83296 Query 1585 TATCTGGTAATCAGGATAGTGCCGAAGGAAAAAGAGCACAAAATAGATTTCAGAGGATTC 1644 || || || || | | || || ||||| ||||||| || | |||||||| ||| Sbjct 83297 TACCTCGTGATACGAGTTGTCCCAAAGGAGAAAGAGCTTAAGGAGAAATTCAGAGGTTTC 83356 Query 1645 GGATGCAAGACGTACGAGGATAGGCTGCGATGTCTAGCCCAGGAGAA 1691 |||||||| |||| || ||| | | |||| || ||||||||||| Sbjct 83357 GGATGCAAAACGTTTGAAGATCGCTTTCGATCGCTGGCCCAGGAGAA 83403 Score = 78.8 bits (86), Expect = 7e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 1984 TACTACTGGCATGGTCAAGATGGAGGAATTGAAGGCCTTAATCAAGACACATGGGTGGTG 2043 ||||||||||| || || || |||||||||||||| || ||||||||||| ||||| | Sbjct 85868 TACTACTGGCAAGGGCAGGACGGAGGAATTGAAGGGCTCAATCAAGACACGTGGGTTATT 85927 Query 2044 GTTTACATCAGC-CAAATCAAGACCGC 2069 || ||||| ||| || || ||||| || Sbjct 85928 GTGTACAT-AGCTCAGATTAAGACTGC 85953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37881119851428