Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_028482.1
Length=11877
Score E
Sequences producing significant alignments: (Bits) Value
seq2126 104 2e-18
seq4011 89.7 4e-14
seq716 89.7 4e-14
>seq2126
Length=104255
Score = 104 bits (114), Expect = 2e-18
Identities = 186/269 (69%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 1484 GACTACTGCTCGTATACCTGCTTCACCCTACGTCAGCTCTA-GACCATGTGAATTACATT 1542
|||| || || | ||| || ||| | || | ||||| | |||||||| |||| |||
Sbjct 101851 GACTCCTCCTAGCATATCTTCTTAATCCGGCC-CAGCTGCATGACCATGTCGATTATATT 101909
Query 1543 GAACAGTATTGTGAATCCTCGACTCTGGATGAGTTGATGAACTATCTGGTAATCAGGATA 1602
| ||||| | || |||| || || ||||||||| ||||||| |||||| | ||
Sbjct 101910 AATAAGTATGACCAGTCGACGACACTAGAGGAGTTGATGGACTATCTCGTAATCCGTGTA 101969
Query 1603 GTGCCGAAGGAAAAAGAGCACAAAATAGATTTCAGAGGATTCGGATGCAAGACGTACGAG 1662
|| | ||||| || |||| ||| || | | | || || ||||||||||| |||
Sbjct 101970 GTTCAAAAGGAGAAGGAGCTCAAGATTCAATATCGCGGGTTTGGATGCAAGACCATCGAA 102029
Query 1663 GATAGGCTGCGATGTCTAGCCCAGGAGAAGGCTGTCATGCAATATTTAGATTTATATAGT 1722
||||||| | | || | || |||||| || |||| |||| | ||| ||||
Sbjct 102030 GATAGGCACAGGTCACTGGTTCAAGAGAAGAATGCGATGCGATATCTGGATGAATATTCA 102089
Query 1723 GATGAGCAAGCCATGACCCTGTCGGAGCT 1751
| ||||||||| |||||| | || |||||
Sbjct 102090 GGTGAGCAAGCAATGACCTTATCTGAGCT 102118
>seq4011
Length=40498
Score = 89.7 bits (98), Expect = 4e-14
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 1525 GACCATGTGAATTACATTGAACAGTATTGTGAATCCTCGACTCTGGATGAGTTGATGAAC 1584
|||||||| |||||||| || || | | | || |||| | || ||| ||||| ||
Sbjct 13557 GACCATGTCGATTACATTAAAATGTGTGATCAGTCGACGACATTAGAGGAGCTGATGGAC 13498
Query 1585 TATCTGGTAATCAGGATAGTGCCGAAGGAAAAAGAGCACAAAATAGATTTCAGAGGATTC 1644
||||| |||||| || |||| || ||||| || ||| |||| | | | | || ||
Sbjct 13497 TATCTCGTAATCCGGGTAGTTCCAAAGGAGAAGGAGATCAAAGTTCAATATCGCGGGTTT 13438
Query 1645 GGATGCAAGACGTACGAGGATAGGCTGCGATGTCTAGCCCAGGAGAAGGCTGTCATGCAA 1704
||| |||| || || || |||| ||| | || || |||||| || |||| |
Sbjct 13437 GGACGCAACACCATGGAAGACAGGCACAGATCATTGGCTCAAGAGAAGAATGCTATGCGA 13378
Query 1705 TATTTAGATTTATATAGTGATGAGCAAGCCATGACCCTGTCGGAGCT 1751
| | | ||| |||| ||||||||||| |||||| | || |||||
Sbjct 13377 TTTCTGGATGAATATTCAGATGAGCAAGCAATGACCTTATCTGAGCT 13331
>seq716
Length=237629
Score = 89.7 bits (98), Expect = 4e-14
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 1525 GACCATGTGAATTACATTGAACAGTATTGTGAATCCTCGACTCTGGATGAGTTGATGAAC 1584
||||||||| | ||||| || ||||| || || | ||||| || ||| ||||| ||
Sbjct 83237 GACCATGTGGACTACATCAAAAAGTATGGTCGCTCACCAACTCTTGAAGAGCTGATGGAC 83296
Query 1585 TATCTGGTAATCAGGATAGTGCCGAAGGAAAAAGAGCACAAAATAGATTTCAGAGGATTC 1644
|| || || || | | || || ||||| ||||||| || | |||||||| |||
Sbjct 83297 TACCTCGTGATACGAGTTGTCCCAAAGGAGAAAGAGCTTAAGGAGAAATTCAGAGGTTTC 83356
Query 1645 GGATGCAAGACGTACGAGGATAGGCTGCGATGTCTAGCCCAGGAGAA 1691
|||||||| |||| || ||| | | |||| || |||||||||||
Sbjct 83357 GGATGCAAAACGTTTGAAGATCGCTTTCGATCGCTGGCCCAGGAGAA 83403
Score = 78.8 bits (86), Expect = 7e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 1984 TACTACTGGCATGGTCAAGATGGAGGAATTGAAGGCCTTAATCAAGACACATGGGTGGTG 2043
||||||||||| || || || |||||||||||||| || ||||||||||| ||||| |
Sbjct 85868 TACTACTGGCAAGGGCAGGACGGAGGAATTGAAGGGCTCAATCAAGACACGTGGGTTATT 85927
Query 2044 GTTTACATCAGC-CAAATCAAGACCGC 2069
|| ||||| ||| || || ||||| ||
Sbjct 85928 GTGTACAT-AGCTCAGATTAAGACTGC 85953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 37881119851428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |