Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_ 202016-09-19] 23,647 sequences; 696,954,138 total letters Query= NC_033015.1 Length=11280 Score E Sequences producing significant alignments: (Bits) Value seq716 102 6e-18 seq5006 84.2 2e-12 seq83 80.6 2e-11 >seq716 Length=237629 Score = 102 bits (112), Expect = 6e-18 Identities = 294/442 (67%), Gaps = 34/442 (8%) Strand=Plus/Plus Query 2143 TATGTGCCTAACGGCCATGAGGCATACTCCTGGGAAGGCCAGGGAGGGGGTATCGAAGGT 2202 |||||||| ||||| | | |||| |||| |||| |||| || || || ||||| Sbjct 85844 TATGTGCCGGACGGCAAAACTGGCTACTACTGGCAAGGGCAGGACGGAGGAATTGAAGGG 85903 Query 2203 CTGAACCAAGACACATGGGTTATTACATACTTAGGTCAGATGAAAGTAGCACTCAGTGGG 2262 || || |||||||| ||||||||| ||| ||| |||||| || || || || Sbjct 85904 CTCAATCAAGACACGTGGGTTATTGTGTACATAGCTCAGATTAAGACTGCCCT---TGA- 85959 Query 2263 CTAGGGATGCCTTACC------ATATGCTGTGCAAGGGAGACGACCTTAGGATAGCGATC 2316 ||| || ||||||| |||| || || ||||| || ||||| ||||||||| | Sbjct 85960 --AGGTATACCTTACCCGTATCATATACTATGTAAGGGCGATGACCTGAGGATAGCGTTA 86017 Query 2317 GCAGTCCCTCCGGCGGTGTGGAAGACCACAGA-GTTGAG--GATATTGA---AGAATGAC 2370 |||||||| || | |||| || ||| | |||| | || | || || |||| Sbjct 86018 GCAGTCCCG-----GGCGAGGAA-ACTACACAAGTTGGGATGAAACGGATAAAGGATGAT 86071 Query 2371 ATAGTCAAGAGGATTTCCGAGAATATGAAAGATTTTGGGCACAAGGTCAAGGT--ACTAG 2428 || | | || |||| | | ||||||||| | || || ||| | ||| | | || Sbjct 86072 TACGTAATGCGGCTTTCACAAACTATGAAAGACGTCGGCCATAAGATTAAGATTAAGAAG 86131 Query 2429 AGTCTTATGGCTCATCTGTATACTTTGCATTCTCAAAAAGTGCGTCAGTACATGAAATAG 2488 || ||| ||| ||| | |||||||| ||||| || || ||| || || || | Sbjct 86132 AG-CTT-TGGTTCAGAGATGTACTTTGCGTTCTCGAAGTACGCATCATATCAAGACATTG 86189 Query 2489 AACTACCGCAGGGATAT---AGAAAGGTTCAGAAATGCTATGGAGCCTCGAACGCTTTGC 2545 ||||||| || || | || ||| |||| || || |||| || | || || || Sbjct 86190 AACTACCTCA---ATCTCTGAGGAAGATTCAAAAGTGTCATGGCGCGACAAATGCATTCT 86246 Query 2546 TGCCTACGCTGGATGAATATAT 2567 |||| | || ||||||||||| Sbjct 86247 TGCCGTCTCTCGATGAATATAT 86268 Score = 95.1 bits (104), Expect = 9e-16 Identities = 200/297 (67%), Gaps = 1/297 (0%) Strand=Plus/Plus Query 1654 TGGAAAGACACCAGACTTCTCTTAGCTTACCTCTTAAACCCTAAGCTCGTACATGATCAT 1713 ||||||||||| || || | ||||||| || || |||| | ||||||| ||| Sbjct 83183 TGGAAAGACACGAGGCTCTTACTAGCTTATCTTCTAGACCCGGCGGAGCTACATGACCAT 83242 Query 1714 GAAACCTACATAGAGAGATATGAAAGCTCAGAAGAACTGGATGATTTGCTAGACTATCTA 1773 | |||||| | | |||| ||||| | || || || || | ||||| || Sbjct 83243 GTGGACTACATCAAAAAGTATGGTCGCTCACCAACTCTTGAAGAGCTGATGGACTACCTC 83302 Query 1774 ATAATCAAAATAGTGCCTAAGGAGTTAGAGCCTAAGGTTCTCTTCAGAGGCTTTGGGTGT 1833 | || | | || || |||||| ||||| ||||| |||||||| || || || Sbjct 83303 GTGATACGAGTTGTCCCAAAGGAGAAAGAGCTTAAGGAGAAATTCAGAGGTTTCGGATGC 83362 Query 1834 AAGACCTACGAGGACAGATTCAGAGCTCTGGCCCAGGAGAAAAATGCTATGCGTTTCCTG 1893 || || | || || | || || | |||||||||||||||||||| ||| | | ||| Sbjct 83363 AAAACGTTTGAAGATCGCTTTCGATCGCTGGCCCAGGAGAAAAATGCGATGAGATACCTC 83422 Query 1894 GACAGGTACTCAGATGAACAGGCCATGACACTGGGAGAATTAGAAAT-GTTGAGAAG 1949 ||| | ||| || || ||||||||||| ||| | || |||| || ||| | ||| Sbjct 83423 GACGAATTCTCCGACGAGCAGGCCATGACGCTGAGTGAGCTAGACATAGTTAAAAAG 83479 >seq5006 Length=23323 Score = 84.2 bits (92), Expect = 2e-12 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 1654 TGGAAAGACACCAGACTTCTCTTAGCTTACCTCTTAAACCCTA---AGCTCGTACATGAT 1710 ||||||||||| || || | ||||||| || || ||||| ||||| ||||| Sbjct 11168 TGGAAAGACACGAGGCTCTTACTAGCTTATCTTCTAGACCCTGCGGAGCTC---CATGAG 11112 Query 1711 CATGAAACCTACATAGAGAGATATGAAAGCTCAGAAGAACTGGATGATTTGCTAGACTAT 1770 |||| || || | | |||| ||||| | || || || || | ||||| Sbjct 11111 CATGTGGACTTAATCAAAAAGTATGGTCGCTCACCAACTCTTGAGGAGCTGATGGACTAC 11052 Query 1771 CTAATAATCAAAATAGTGCCTAAGGAGTTAGAGCCTAAGGTTCTCTTCAGAGGCTTTGGG 1830 | | || | | || || |||||| ||||| ||||| ||||||||||| | Sbjct 11051 TTCGTGATACGAGTTGTCCCAAAGGAGAAAGAGCTTAAGGAGAAATTCAGAGGCTTCGCA 10992 Query 1831 TGTAAGACCTACGAGGACAGATTCAGAGCTCTGGCCCAGGAGAAAAATGCTATGCGTTTC 1890 || || | | ||| || | || || | |||||||| ||||||||||| ||| | | | Sbjct 10991 TGCAAAGCGTTCGAAGATCGCTTTCGATCGCTGGCCCAAGAGAAAAATGCGATGAGATAC 10932 Query 1891 CTGGACAGGTACTCAGATGAACAGGCCATGACACTG 1926 || ||| || ||| || |||||||||||||| ||| Sbjct 10931 CTCGACGAGTTCTCCGACGAACAGGCCATGACCCTG 10896 >seq83 Length=524055 Score = 80.6 bits (88), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 2169 CTCCTGGGAAGGCCAGGGAGGGGGTATCGAAGGTCTGAACCAAGACACATGGGTTATTAC 2228 || |||| |||| || | || ||| | |||||||| || || ||||| |||||||| Sbjct 180605 CTACTGGCAAGGTCAAGTCGGTGGTGTTGAAGGTCTAAATCAGGACACGTGGGTTATAGT 180664 Query 2229 ATACTTAGGTCAGATGAAAGTAGCACTCAGTGGGC-TAGGGATGCCTTACCATATGCTGT 2287 |||| ||| || || || |||| | || ||| || | ||||||||||| | | Sbjct 180665 ATACATAGCACAAATAAAGACAGCATT-AGAAGGCATACCGTATCCTTACCATATCTTAT 180723 Query 2288 GCAAGGGAGACGACCTTAGGATAGCGATCGCAGTCCCT 2325 |||||||||| || || ||||||||| | || || ||| Sbjct 180724 GCAAGGGAGATGATCTGAGGATAGCGTTAGCCGTTCCT 180761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35971228072752