Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heligmosomoides_20polygyrus_20bakeri_20[genbank_20GCA_5F900096555.1_
202016-09-19] 23,647 sequences; 696,954,138 total letters
Query= NC_033015.1
Length=11280
Score E
Sequences producing significant alignments: (Bits) Value
seq716 102 6e-18
seq5006 84.2 2e-12
seq83 80.6 2e-11
>seq716
Length=237629
Score = 102 bits (112), Expect = 6e-18
Identities = 294/442 (67%), Gaps = 34/442 (8%)
Strand=Plus/Plus
Query 2143 TATGTGCCTAACGGCCATGAGGCATACTCCTGGGAAGGCCAGGGAGGGGGTATCGAAGGT 2202
|||||||| ||||| | | |||| |||| |||| |||| || || || |||||
Sbjct 85844 TATGTGCCGGACGGCAAAACTGGCTACTACTGGCAAGGGCAGGACGGAGGAATTGAAGGG 85903
Query 2203 CTGAACCAAGACACATGGGTTATTACATACTTAGGTCAGATGAAAGTAGCACTCAGTGGG 2262
|| || |||||||| ||||||||| ||| ||| |||||| || || || ||
Sbjct 85904 CTCAATCAAGACACGTGGGTTATTGTGTACATAGCTCAGATTAAGACTGCCCT---TGA- 85959
Query 2263 CTAGGGATGCCTTACC------ATATGCTGTGCAAGGGAGACGACCTTAGGATAGCGATC 2316
||| || ||||||| |||| || || ||||| || ||||| ||||||||| |
Sbjct 85960 --AGGTATACCTTACCCGTATCATATACTATGTAAGGGCGATGACCTGAGGATAGCGTTA 86017
Query 2317 GCAGTCCCTCCGGCGGTGTGGAAGACCACAGA-GTTGAG--GATATTGA---AGAATGAC 2370
|||||||| || | |||| || ||| | |||| | || | || || ||||
Sbjct 86018 GCAGTCCCG-----GGCGAGGAA-ACTACACAAGTTGGGATGAAACGGATAAAGGATGAT 86071
Query 2371 ATAGTCAAGAGGATTTCCGAGAATATGAAAGATTTTGGGCACAAGGTCAAGGT--ACTAG 2428
|| | | || |||| | | ||||||||| | || || ||| | ||| | | ||
Sbjct 86072 TACGTAATGCGGCTTTCACAAACTATGAAAGACGTCGGCCATAAGATTAAGATTAAGAAG 86131
Query 2429 AGTCTTATGGCTCATCTGTATACTTTGCATTCTCAAAAAGTGCGTCAGTACATGAAATAG 2488
|| ||| ||| ||| | |||||||| ||||| || || ||| || || || |
Sbjct 86132 AG-CTT-TGGTTCAGAGATGTACTTTGCGTTCTCGAAGTACGCATCATATCAAGACATTG 86189
Query 2489 AACTACCGCAGGGATAT---AGAAAGGTTCAGAAATGCTATGGAGCCTCGAACGCTTTGC 2545
||||||| || || | || ||| |||| || || |||| || | || || ||
Sbjct 86190 AACTACCTCA---ATCTCTGAGGAAGATTCAAAAGTGTCATGGCGCGACAAATGCATTCT 86246
Query 2546 TGCCTACGCTGGATGAATATAT 2567
|||| | || |||||||||||
Sbjct 86247 TGCCGTCTCTCGATGAATATAT 86268
Score = 95.1 bits (104), Expect = 9e-16
Identities = 200/297 (67%), Gaps = 1/297 (0%)
Strand=Plus/Plus
Query 1654 TGGAAAGACACCAGACTTCTCTTAGCTTACCTCTTAAACCCTAAGCTCGTACATGATCAT 1713
||||||||||| || || | ||||||| || || |||| | ||||||| |||
Sbjct 83183 TGGAAAGACACGAGGCTCTTACTAGCTTATCTTCTAGACCCGGCGGAGCTACATGACCAT 83242
Query 1714 GAAACCTACATAGAGAGATATGAAAGCTCAGAAGAACTGGATGATTTGCTAGACTATCTA 1773
| |||||| | | |||| ||||| | || || || || | ||||| ||
Sbjct 83243 GTGGACTACATCAAAAAGTATGGTCGCTCACCAACTCTTGAAGAGCTGATGGACTACCTC 83302
Query 1774 ATAATCAAAATAGTGCCTAAGGAGTTAGAGCCTAAGGTTCTCTTCAGAGGCTTTGGGTGT 1833
| || | | || || |||||| ||||| ||||| |||||||| || || ||
Sbjct 83303 GTGATACGAGTTGTCCCAAAGGAGAAAGAGCTTAAGGAGAAATTCAGAGGTTTCGGATGC 83362
Query 1834 AAGACCTACGAGGACAGATTCAGAGCTCTGGCCCAGGAGAAAAATGCTATGCGTTTCCTG 1893
|| || | || || | || || | |||||||||||||||||||| ||| | | |||
Sbjct 83363 AAAACGTTTGAAGATCGCTTTCGATCGCTGGCCCAGGAGAAAAATGCGATGAGATACCTC 83422
Query 1894 GACAGGTACTCAGATGAACAGGCCATGACACTGGGAGAATTAGAAAT-GTTGAGAAG 1949
||| | ||| || || ||||||||||| ||| | || |||| || ||| | |||
Sbjct 83423 GACGAATTCTCCGACGAGCAGGCCATGACGCTGAGTGAGCTAGACATAGTTAAAAAG 83479
>seq5006
Length=23323
Score = 84.2 bits (92), Expect = 2e-12
Identities = 185/276 (67%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 1654 TGGAAAGACACCAGACTTCTCTTAGCTTACCTCTTAAACCCTA---AGCTCGTACATGAT 1710
||||||||||| || || | ||||||| || || ||||| ||||| |||||
Sbjct 11168 TGGAAAGACACGAGGCTCTTACTAGCTTATCTTCTAGACCCTGCGGAGCTC---CATGAG 11112
Query 1711 CATGAAACCTACATAGAGAGATATGAAAGCTCAGAAGAACTGGATGATTTGCTAGACTAT 1770
|||| || || | | |||| ||||| | || || || || | |||||
Sbjct 11111 CATGTGGACTTAATCAAAAAGTATGGTCGCTCACCAACTCTTGAGGAGCTGATGGACTAC 11052
Query 1771 CTAATAATCAAAATAGTGCCTAAGGAGTTAGAGCCTAAGGTTCTCTTCAGAGGCTTTGGG 1830
| | || | | || || |||||| ||||| ||||| ||||||||||| |
Sbjct 11051 TTCGTGATACGAGTTGTCCCAAAGGAGAAAGAGCTTAAGGAGAAATTCAGAGGCTTCGCA 10992
Query 1831 TGTAAGACCTACGAGGACAGATTCAGAGCTCTGGCCCAGGAGAAAAATGCTATGCGTTTC 1890
|| || | | ||| || | || || | |||||||| ||||||||||| ||| | | |
Sbjct 10991 TGCAAAGCGTTCGAAGATCGCTTTCGATCGCTGGCCCAAGAGAAAAATGCGATGAGATAC 10932
Query 1891 CTGGACAGGTACTCAGATGAACAGGCCATGACACTG 1926
|| ||| || ||| || |||||||||||||| |||
Sbjct 10931 CTCGACGAGTTCTCCGACGAACAGGCCATGACCCTG 10896
>seq83
Length=524055
Score = 80.6 bits (88), Expect = 2e-11
Identities = 114/158 (72%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 2169 CTCCTGGGAAGGCCAGGGAGGGGGTATCGAAGGTCTGAACCAAGACACATGGGTTATTAC 2228
|| |||| |||| || | || ||| | |||||||| || || ||||| ||||||||
Sbjct 180605 CTACTGGCAAGGTCAAGTCGGTGGTGTTGAAGGTCTAAATCAGGACACGTGGGTTATAGT 180664
Query 2229 ATACTTAGGTCAGATGAAAGTAGCACTCAGTGGGC-TAGGGATGCCTTACCATATGCTGT 2287
|||| ||| || || || |||| | || ||| || | ||||||||||| | |
Sbjct 180665 ATACATAGCACAAATAAAGACAGCATT-AGAAGGCATACCGTATCCTTACCATATCTTAT 180723
Query 2288 GCAAGGGAGACGACCTTAGGATAGCGATCGCAGTCCCT 2325
|||||||||| || || ||||||||| | || || |||
Sbjct 180724 GCAAGGGAGATGATCTGAGGATAGCGTTAGCCGTTCCT 180761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35971228072752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |