Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq915 502 8e-140 seq263 149 2e-33 seq14 114 4e-23 seq920 98.7 3e-18 seq46 86.0 2e-14 >seq915 Length=7811 Score = 502 bits (556), Expect = 8e-140 Identities = 439/546 (80%), Gaps = 34/546 (6%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 1293 CTTTTACTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 1352 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| || || || Sbjct 1353 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCGGTGCGAGTC 1412 Query 127 GGC---CCGCGAAGGACCTTAACGCCAG--AAAATGGTCGGTGAAGAC-----------C 170 | || | || | ||||| | |||| ||| || || | Sbjct 1413 GTTAAACCACCGAGTAGTTTAACTTAAATCAAAAATTTCGA--AACACATATAATGCTTC 1470 Query 171 AGTTC-CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT------ 223 | ||| || || | || |||||||| || |||| | |||||||||||||||| Sbjct 1471 AATTCTCGTTTTACCGAATAAGTAAAGAATCGATGAAAGTAGTGGTATTTCACTGTTGGT 1530 Query 224 ---TGCGCCG------AAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAA 274 || | ||| ||||||||||| |||||||||||| | | |||||| | Sbjct 1531 ATTTGTACAAGAATACAAAAACCTCCCACTTATGCTACACCTCTCATGACTCTTCACAGA 1590 Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1591 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCCCGTT 1650 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1651 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 1710 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1711 CATGCGCGTCACGAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 1770 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1771 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTTACATTCAGAGCACTGGGCAG 1830 Query 515 AAATCA 520 |||||| Sbjct 1831 AAATCA 1836 Score = 104 bits (114), Expect = 8e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 105 CTTTTACTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 46 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATG 111 ||| |||||||| ||||||||| |||||||||| ||||||| || Sbjct 45 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTG 1 >seq263 Length=92486 Score = 149 bits (164), Expect = 2e-33 Identities = 87/89 (98%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG-CATTTGGCTACCTTAA 438 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 85325 TCTCGTTAATCCATTCATGCGCGTCACGAATTAGATGACGAGGGCATTTGGCTACCTTAA 85384 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||||||||||||||||||||||||||| Sbjct 85385 GAGAGTCATAGTTACTCCCGCCGTTTACC 85413 >seq14 Length=563387 Score = 114 bits (126), Expect = 4e-23 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||| |||||||||||||||||||| || || | ||||| || ||| ||||||| Sbjct 154496 GAGTCAATCTCAACAGGGTCTTCTTTCCTCGATGTGTTTGCCAAACCTATTCTCTTGGCT 154555 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||| || | ||||||| |||||| ||||| |||||||||||||||||| Sbjct 154556 GTGGCTTTGATAGATAGCAGATAGAGACAGCAAGAATCTCGTTAATCCATT 154606 >seq920 Length=7717 Score = 98.7 bits (108), Expect = 3e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13 CTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAA 72 |||||| ||| |||| || ||| |||| ||||||||||||||||||| | ||| | Sbjct 2 CTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACGTTTTGA 61 Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATG 111 ||||||| ||||||||| |||||||||| ||||||| || Sbjct 62 CAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTG 100 >seq46 Length=345232 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/106 (78%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| ||||||| ||| | | |||| | ||||||||||||||||||| ||| Sbjct 258952 CTCCCACTTATGTTACACCTTTCATGACTCTTCATAGAGTCGGACTAGAGTCAAGCCCAA 258893 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 || | ||||| || |||| |||||||||||| ||||||| Sbjct 258892 CA---TAATCTTTTCCAGCTGTGCTTGCCAAGCCCGTTTCCTTGGC 258850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635105747072