Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq915 369 1e-99 seq1072 143 8e-32 seq250 136 1e-29 seq173 98.7 3e-18 seq269 96.9 1e-17 seq832 77.0 1e-11 >seq915 Length=7811 Score = 369 bits (408), Expect = 1e-99 Identities = 391/504 (78%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||| ||| | || || ||||| | |||||||||| Sbjct 6667 GTACCCATTCCGATAACCGGCCTCAAA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 6725 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6726 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6785 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 6786 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 6845 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || ||||||||||||||||||| |||||| | |||| || | ||||||| Sbjct 6846 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATACGTCGCCGGTA 6905 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCC-CGAAGGGC--GT 296 |||| ||||||||| | | || |||| || ||||||| | | | || | | Sbjct 6906 CAAGACCATGCGATCAGCCATAGCTATTCAGAGTCACCAATTAACGGGCTAATAACCCGA 6965 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGC 355 | | |||| |||||||| || | | | ||| ||||||| | ||| |||||||||||| Sbjct 6966 TTGGTTTTAATCTAATAGATGCGCTCGTTCAAAAGTCGGAGCTTTGGTGCATGTATTAGC 7025 Query 356 TCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||| |||| |||||||| || | ||| || ||||| || | ||| ||| | Sbjct 7026 TCTAGAATTGCCACAGTTATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGTT 7084 Query 414 TTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTGCTTATA-CTTAGACATGCATGGCT 471 ||||||||| ||||| ||||||| | |||| || || | ||||||||||||||||| Sbjct 7085 ATAATGAGCCGTTCGCGGTTTCACCATTATAGGTTTATTTGAACTTAGACATGCATGGCT 7144 Query 472 TAATCTTTGAGACAAGCATATGAC 495 || ||||||||||||||||| || Sbjct 7145 TAGCCTTTGAGACAAGCATATAAC 7168 >seq1072 Length=4024 Score = 143 bits (158), Expect = 8e-32 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||| | | | || ||| ||||| ||||| |||| ||||| Sbjct 2650 TATTTTTCATCACTACCTCCTCATTCTGAGAATGGTCAATTTACGCGCTTGCTACCTTCG 2591 Query 103 TTGGATGTGG--TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 ||||| ||| ||||||||||||||| ||| || ||||| ||||||| | |||| ||| Sbjct 2590 CTGGATATGGGGTAGCCGTTTCTCAGGTTCCTTCGCCGGATTCGAACCGTTATTCTTCGT 2531 Query 161 TACCCGTTGA----TACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 || ||||| | | |||||||||| || |||||||| |||||||||| |||||| Sbjct 2530 TATCCGTTTACAACCATCATGGTAGGCACATAAACTACCATCAAAAGTTGATAAGGCAGA 2471 Query 217 AATTTGAATGAACCATCGCCGGCTCAAGGCCATGCG 252 || ||| || | | ||||| |||| ||||||| Sbjct 2470 TATCTGATGGATACGTTGCCGGTACAAGACCATGCG 2435 >seq250 Length=97717 Score = 136 bits (150), Expect = 1e-29 Identities = 257/370 (69%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 20 GACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGT 79 |||| |||||| | || || ||||| | |||||||||| || || | ||| Sbjct 88046 GACCTCAAAGAGAACGGTCCCATTATTTTCTTTCACTACCTCATTCTGA---GAGTAGGT 88102 Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 |||||| ||| ||||| ||||| |||||||||| ||| ||||||||| | | || |||| Sbjct 88103 AATTTGTGCGTCTGCTACCTTCTTTGGATGTGGCAGCTGTTTCTCAGACACTGTCCCCGG 88162 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC-TATCCTACCATC 198 | ||||||||| |||| |||||||||||| ||||||||| || || ||||||| Sbjct 88163 AGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTACATTACATAAATTACCATC 88222 Query 199 GAAAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCG 257 ||| ||| | |||| | |||| || ||||| | |||| ||||||||| | Sbjct 88223 GAA-----ATAAGTCAGACAGCTTGATAGATATGTCGCCAGTACAAGACCATGCGATCAG 88277 Query 258 TTA-AGTTA-TTATGAATCACCAAGGA---GCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312 | || || || || ||||||| | | | | || | |||| || |||| Sbjct 88278 CCATAGCTATTTCAGAGTCACCAATTAACGGGCTAATAACCCGACTGATTTTAATTTAAT 88337 Query 313 AAATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGG 371 | || || | ||| || |||| | ||| | | || |||||||||||| ||||| || | Sbjct 88338 AGATGAACTCGTTCTAAATTCGGAGCTTTGATGTATATATTAGCTCTAGGATTACTACAG 88397 Query 372 TTATCCATGT 381 ||||||| || Sbjct 88398 TTATCCAGGT 88407 >seq173 Length=130899 Score = 98.7 bits (108), Expect = 3e-18 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||| | ||||||| || |||||| || || | ||||||||||| | ||||| Sbjct 14307 GTAATTTGCGTGACTGCTGCTTTTTTTGGATTTGATAATCATTTCTCAGGCTTCTTCTCC 14366 Query 138 GGAATCGAACCCTAATTCCCCGTTA-CCCGTTGATACCATGGTAGGCCACTATCCTACCA 196 ||||||||||| | |||| ||||| || || || ||| ||| | || ||| || Sbjct 14367 GGAATCGAACCTTTATTCTTCGTTATCCTGTCACAACAATGATAGCCATATAAACTATCA 14426 Query 197 TCGA-AAGTTGATAGGGCAG--AAATTTGA 223 |||| ||||||||| |||| |||||||| Sbjct 14427 TCGATAAGTTGATAAAGCAGATAAATTTGA 14456 >seq269 Length=89902 Score = 96.9 bits (106), Expect = 1e-17 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||| |||||||||||| ||||| |||||||||| | ||||||||| Sbjct 33323 TCAGGCTCCCTCTCTGGAATCGAACCCATATTCC--GTTACCCGTTACAATCATGGTAGG 33380 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 | || |||||||||||| |||||| || ||| | |||| || | |||||| Sbjct 33381 CACATAAACTACCATCGAAAATTGATAAGGTAGACACTTGATAGATACGTCGCCG 33435 >seq832 Length=10628 Score = 77.0 bits (84), Expect = 1e-11 Identities = 111/154 (72%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCT-GCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 || ||| ||||||||| || ||| |||||||||||| |||| | |||| | ||| | Sbjct 7488 GAATGGATAATTTGCGATACTTGCTACCTTCCTTGGATACGGTAACTGTTTTTTAGGTTT 7429 Query 131 CCTCTCCGGAATCGAAC-CCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 ||| |||| ||| || ||| |||| |||||| || || |||||||||| | || Sbjct 7428 CCTTTCCGAAATTATACTCCTTATTCACCGTTATCCATTACAACCATGGTAGACATATAA 7369 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGA 223 ||| ||| |||| || ||| | || | | |||| Sbjct 7368 ACTATCATTGAAAATTAATAAGACAAACACTTGA 7335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510312940544