Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29] 26,196 sequences; 258,067,405 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq8748 116 3e-21 seq1949 116 3e-21 seq13211 113 4e-20 seq545 111 1e-19 seq6 107 2e-18 >seq8748 Length=9037 Score = 116 bits (128), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 8456 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 8514 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || |||||| |||| ||| |||| ||||| ||||| ||||| Sbjct 8515 CATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 8574 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || ||||||| || ||||| || ||||| || || || || || Sbjct 8575 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGA 8634 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 || || | ||| | ||||||||| ||| || ||| ||| Sbjct 8635 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 8675 >seq1949 Length=26475 Score = 116 bits (128), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 11834 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 11892 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || |||||| |||| ||| |||| ||||| ||||| ||||| Sbjct 11893 TATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 11952 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || ||||||| || ||||| || ||||| || || || || || Sbjct 11953 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGA 12012 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 || || | ||| | ||||||||| ||| || ||| ||| Sbjct 12013 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 12053 >seq13211 Length=5644 Score = 113 bits (124), Expect = 4e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 4566 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 4624 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || |||||| |||| || |||| ||||| ||||| ||||| Sbjct 4625 CATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAATTTTTTG 4684 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || ||||||| || ||||| || ||||| || || || || || Sbjct 4685 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGAGA 4744 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 || || | ||| | ||||||||| ||| || ||| ||| Sbjct 4745 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 4785 >seq545 Length=42957 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 28390 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 28448 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | ||| |||||| |||| ||| |||| ||||| ||||| ||||| Sbjct 28449 CATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 28508 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || |||||| || ||||| || ||||| || || || || || Sbjct 28509 GCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGAGA 28568 Query 61614 CGAGGGCATGCATTGTGATTTTGCT 61638 || || | ||| | ||||||||| Sbjct 28569 TGAAGGACTTCATCGAGATTTTGCT 28593 >seq6 Length=123133 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| || ||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 115966 AAAGCTGAATGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 115908 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| || |||||| |||| ||| |||| ||||| ||||| ||||| Sbjct 115907 CATTGCTTTTGCCACAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 115848 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || ||||||| || ||||| || ||||| || || || || || Sbjct 115847 GCTAAAGAAACGCGGTTTTATGCCTGGGCTGACACAAAGTAATGAATTAATTTCTCGTGA 115788 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 || || | ||| | ||||||||| ||| || ||| ||| Sbjct 115787 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 115747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441070949440