Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20arenaria_20[genbank_20GCA_5F900003985.1_202017-04-29]
26,196 sequences; 258,067,405 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq8748 116 3e-21
seq1949 116 3e-21
seq13211 113 4e-20
seq545 111 1e-19
seq6 107 2e-18
>seq8748
Length=9037
Score = 116 bits (128), Expect = 3e-21
Identities = 160/221 (72%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493
||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| |
Sbjct 8456 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 8514
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| || ||||| | || |||||| |||| ||| |||| ||||| ||||| |||||
Sbjct 8515 CATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 8574
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
| | |||||||| || ||||||| || ||||| || ||||| || || || || ||
Sbjct 8575 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGA 8634
Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654
|| || | ||| | ||||||||| ||| || ||| |||
Sbjct 8635 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 8675
>seq1949
Length=26475
Score = 116 bits (128), Expect = 3e-21
Identities = 160/221 (72%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493
||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| |
Sbjct 11834 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 11892
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| || ||||| | || |||||| |||| ||| |||| ||||| ||||| |||||
Sbjct 11893 TATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 11952
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
| | |||||||| || ||||||| || ||||| || ||||| || || || || ||
Sbjct 11953 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGA 12012
Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654
|| || | ||| | ||||||||| ||| || ||| |||
Sbjct 12013 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 12053
>seq13211
Length=5644
Score = 113 bits (124), Expect = 4e-20
Identities = 159/221 (72%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493
||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| |
Sbjct 4566 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 4624
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| || ||||| | || |||||| |||| || |||| ||||| ||||| |||||
Sbjct 4625 CATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAATTTTTTG 4684
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
| | |||||||| || ||||||| || ||||| || ||||| || || || || ||
Sbjct 4685 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGAGA 4744
Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654
|| || | ||| | ||||||||| ||| || ||| |||
Sbjct 4745 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 4785
>seq545
Length=42957
Score = 111 bits (122), Expect = 1e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493
||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| |
Sbjct 28390 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 28448
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| || ||||| | ||| |||||| |||| ||| |||| ||||| ||||| |||||
Sbjct 28449 CATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 28508
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
| | |||||||| || |||||| || ||||| || ||||| || || || || ||
Sbjct 28509 GCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGAGA 28568
Query 61614 CGAGGGCATGCATTGTGATTTTGCT 61638
|| || | ||| | |||||||||
Sbjct 28569 TGAAGGACTTCATCGAGATTTTGCT 28593
>seq6
Length=123133
Score = 107 bits (118), Expect = 2e-18
Identities = 158/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493
||||| || ||||| |||| ||||| | |||| | ||| ||||||||||||| |
Sbjct 115966 AAAGCTGAATGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 115908
Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553
| || ||||| || |||||| |||| ||| |||| ||||| ||||| |||||
Sbjct 115907 CATTGCTTTTGCCACAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 115848
Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613
| | |||||||| || ||||||| || ||||| || ||||| || || || || ||
Sbjct 115847 GCTAAAGAAACGCGGTTTTATGCCTGGGCTGACACAAAGTAATGAATTAATTTCTCGTGA 115788
Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654
|| || | ||| | ||||||||| ||| || ||| |||
Sbjct 115787 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 115747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397441070949440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |