Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq22225 170 3e-40 seq6649 105 1e-20 >seq22225 Length=1079 Score = 170 bits (188), Expect = 3e-40 Identities = 187/240 (78%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| |||||||||||| |||||| |||||| | Sbjct 617 GTACAAAGGGCAGGGACGTAATCAAAGCGAG-TTGATGACTCGCACTTACTTGGAATT-C 674 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | || ||||||||| | ||||| |||||| || ||||| | || Sbjct 675 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCATGGGTTT 734 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||| | || | || | || ||| | | ||||||||||||||||| Sbjct 735 ACCAATCCCTTTCGAGAATGGATACAG-CACGCTGATTTCGCCAGTGTAGCGCGCGTGCA 793 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||||| ||||| || |||| | ||||| Sbjct 794 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAAA 850 >seq6649 Length=3822 Score = 105 bits (116), Expect = 1e-20 Identities = 125/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 ||||||| | | || ||||||||| | ||||| |||||| ||| ||||| | || Sbjct 594 CCTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCGAATTTTCATTGGTT 535 Query 120 -ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| |||| | || | || ||| | | ||||||||||||||||| Sbjct 534 TACCAATCCCTTTCGGGAAAGGACA-AG-CACGCTGATTTCGCCAGTGTAGCGCGCGTGC 477 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 476 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751572399640