Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq31651 242 2e-61 seq31513 134 6e-29 seq6649 118 4e-24 seq25738 100 1e-18 >seq31651 Length=637 Score = 242 bits (268), Expect = 2e-61 Identities = 227/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 293 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 234 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAGGG-TGCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| |||||| |||||| || Sbjct 233 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCCTGAGGGGTGCACCGCCG 177 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| ||||||| |||| ||||||||||||| Sbjct 176 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGA 117 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 116 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 57 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 56 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 14 Score = 120 bits (132), Expect = 1e-24 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGAT 135 ||| |||| | || || |||||||| |||| |||||||||||||| ||||||| | || Sbjct 637 GGTGAATTCCGTCCAAGGCTAAATACTGGCGAGAGACCGATAGCGAACAAGTACCGCGAG 578 Query 136 CGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||||||||||||| |||||| ||||||||| ||| || | ||||||||| | ||||| Sbjct 577 GGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGA 518 Query 196 AGCG 199 |||| Sbjct 517 AGCG 514 >seq31513 Length=641 Score = 134 bits (148), Expect = 6e-29 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| ||||||||||||||||||||||| || | | |||||||||||||||||||| Sbjct 161 GTTGGTACCCGAAAGATGGTGAACTATGCTTGGGCAAGACGAAGCCAGAGGAAACTCTGG 102 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| | |||| ||||| |||||||||||||||||| | || |||||||||||| Sbjct 101 TGGAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGAGTATAGGGGCGA 43 >seq6649 Length=3822 Score = 118 bits (130), Expect = 4e-24 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||| ||||| | || | || ||||| || ||||| |||||| Sbjct 1891 GAGTCGGGTTGTTTGGGAACGCAGCCCAAAGTAGGTCGTAAACTTGATCTAAGACTAAAT 1950 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | | | |||||||||||| ||||||| |||| ||||| || ||||||||||| | Sbjct 1951 A-CGCCTACGAGACCGATAGCAAACAAGTACTGTGAAGGAAAGTTGCAAAGCACTTTGAA 2009 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 2010 GAGAGAGTTAAAGAGGACGTGAAA 2033 >seq25738 Length=870 Score = 100 bits (110), Expect = 1e-18 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG-GGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| |||| ||| || |||||| ||||| || |||||| | | |||| |||||| Sbjct 519 GAGTCAGGTTGCTTGAGAGTGCAGC-CTAAAGCAGGTGGTAAACTCCACCTAAGGCTAAA 577 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||| |||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 578 TATTACAGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 637 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 638 GAGAGAGTTCAATAGGACGTGAAA 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078740970800