Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6649 228 1e-57 seq22225 217 2e-54 >seq6649 Length=3822 Score = 228 bits (252), Expect = 1e-57 Identities = 202/248 (81%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 496 CGCCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC- 438 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 |||| ||| ||||| | || | | ||||||||||||| | | ||| || | Sbjct 437 TCAAT-TTCGTGCGGCTGTACACCGAAAATCCCTCTAAGAAGTTA--CGCCACACAGAAG 381 Query 134 CGATG---GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | ||| || ||||||| ||| || |||||| ||||||||||||| ||||||||||| Sbjct 380 CAATGTGCGGACTATTTAATAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAA 321 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||| Sbjct 320 TCGCTCCACGAACTAAGAACGGCCATGCACCACCATCCACCAAATCATGAAAGAGCTATC 261 Query 251 AATCTGTC 258 |||||||| Sbjct 260 AATCTGTC 253 >seq22225 Length=1079 Score = 217 bits (240), Expect = 2e-54 Identities = 199/246 (81%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 773 CGCCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC- 831 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCAC-CAACCATAG 132 |||| || | |||| | || | | |||||||||||||| | | || ||| Sbjct 832 TCAATCT-CGTGCGGCTAAACACCGAAAATCCCTCTAAGAAGCAACTGAGACATTGATAA 890 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || | |||||||| ||| || |||||| ||||||||||||| ||||||||||||| Sbjct 891 TCTC-GTTACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATC 949 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||| Sbjct 950 GATCCACGAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTATCAA 1009 Query 253 TCTGTC 258 |||||| Sbjct 1010 TCTGTC 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796346925576