Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq22225 178 2e-42 seq6649 113 9e-23 >seq22225 Length=1079 Score = 178 bits (196), Expect = 2e-42 Identities = 198/259 (76%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | |||| | ||||| || | ||||| ||||||||||||||| Sbjct 873 GCTTCTTAGAGGGATTTTCGGTGTTTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGT 816 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||||||||||||||||| | | || || | | | Sbjct 815 GATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCGAAATCAGCGTGCTG-TA 757 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || | || |||| | ||||| | | ||| | || |||| | ||||| | ||| Sbjct 756 TCCATTCTCGAAAGGGATTGGTAAACCCATGAAAATTTGCCGTGATTGGGATCGGAAATT 697 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | |||||||||| || |||||| ||| ||||||| | ||| ||||| Sbjct 696 GCAATTATTTTCCGTGAACGAGGAATTCCAAGTAAGTGCGAGTCATCAACTCGCTTTGAT 637 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 636 TACGTCCCTGCCCTTTGTA 618 >seq6649 Length=3822 Score = 113 bits (124), Expect = 9e-23 Identities = 149/202 (74%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | |||| | ||||| ||| || ||| |||||||||||||||| Sbjct 397 CTTCTTAGAGGGATTTTCGGTGTACAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 454 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| | | || | || | | Sbjct 455 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCGAAATCA--GCGTGCTTGT 512 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| ||| |||| | ||||| | | ||| | | |||| | ||||| | |||| Sbjct 513 CCTTTCCCGAAAGGGATTGGTAAACCAATGAAAATTCGCCGTGATTGGGATCGGAAATTG 572 Query 251 CAATTATTGCTCTTCAACGAGG 272 |||||||| | | ||||||| Sbjct 573 CAATTATTTTCCGTGAACGAGG 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946644031488