Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq34637 466 6e-129 seq22224 443 7e-122 seq27043 197 5e-48 seq3349 161 3e-37 seq57185 84.2 7e-14 >seq34637 Length=550 Score = 466 bits (516), Expect = 6e-129 Identities = 391/476 (82%), Gaps = 10/476 (2%) Strand=Plus/Minus Query 55 ACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCA 114 |||||||||| |||| |||||||| ||||||||| |||||||||| ||||||| ||||| Sbjct 550 ACCTGCGTTACAGTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCA 491 Query 115 TCAACCCGGATCGGCC---CGCGAAG-----GACCTTAACGCCAGAAAATGGT-CGGTGA 165 || | ||||||| || ||| || | ||||||| ||| || || | || Sbjct 490 TCGGCGCGGATCGACCAACCGCCGAGCGGTCGGCCTTAACACCAAAATCAAGTGCTTTGC 431 Query 166 AGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTG 225 || || ||||| || | |||||||||| || |||| | |||||||||||||||| | Sbjct 430 AGCACAATTCCGTTTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGG 371 Query 226 CG-CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAG 284 || || || ||||||||||| |||||||||||| | ||||||||||| |||||| Sbjct 370 CGGCCCGAAGAACTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAG 311 Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 |||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| Sbjct 310 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAAATTTGCCAAGCCCGTTCCCTTGGCTG 251 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 250 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCAAGAC 191 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 ||||| | |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 190 CGAAATTACCGGCCGAGGCATTTCGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 131 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||| | |||| | ||| |||||||||||||||||||||||||| Sbjct 130 ACCCGCGCTTAAGCAAGTTTCCTTGTTTTAACATTCAGAGCACTGGGCAGAAATCA 75 >seq22224 Length=1079 Score = 443 bits (490), Expect = 7e-122 Identities = 299/333 (90%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG--CTCCCACTTAT 247 |||||| |||| || | ||||||||||||||| || |||| | ||||||||||| Sbjct 14 AGTAAAGAAACTATGAAAGTAGTGGTATTTCAC---CGGCGAATTGCTTCTCCCACTTAT 70 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 |||||||||||| ||| |||||| | || ||||||||||||||||||||||||||||| Sbjct 71 GCTACACCTCTCATGTCTCTTCACAGATTCAGACTAGAGTCAAGCTCAACAGGGTCTTCT 130 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 TTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 190 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 191 GGACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCACTAATTAGATGACGAGGCATTT 250 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 ||||||||||||||||||||||||||||||||||||||||||||||| || | |||| | Sbjct 251 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAATTAAGTTTCCT 310 Query 488 CACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | || |||||||||||||||||||||||||| Sbjct 311 TAAGTTAACATTCAGAGCACTGGGCAGAAATCA 343 >seq27043 Length=811 Score = 197 bits (218), Expect = 5e-48 Identities = 117/122 (96%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAGTAGCG 60 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 61 CTTGGTTGAATTTCTTCACTTTGACATTCATACCACTGGGCAGAAATCACATTGCGTCAA 120 Query 532 CA 533 || Sbjct 121 CA 122 >seq3349 Length=5928 Score = 161 bits (178), Expect = 3e-37 Identities = 129/154 (84%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| |||| |||||||||| || || ||||||||||| |||||||||||||||||| Sbjct 5499 CTCCCAATTATGCTACACCTCTAAATTC--TTCACAAAGTCAGACTAGAGTCAAGCTCAA 5556 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||| ||| | | | | |||||| ||| |||||||||||||| | ||| Sbjct 5557 CAGGGTCTTCTTTCTCCGTTAAATTTGTCAAGCCAGTTTGCTTGGCTGTGGTTTAGGTAG 5616 Query 357 A----TAGTAGATAGGGACAGTGGGAATCTCGTT 386 | ||||||||| ||||||||||||| ||||| Sbjct 5617 ATATGTAGTAGATACGGACAGTGGGAATTTCGTT 5650 >seq57185 Length=212 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 164 TTCACAAAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634240203008