Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq34206 91.5 2e-16 seq23114 84.2 4e-14 seq27432 77.0 5e-12 >seq34206 Length=561 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| || | || |||| || | Sbjct 89 GTACGAGAGGAACCGCAGG-TTCGGAC-ATTTGGTTCATGTGCTTGATCGACCGATCATT 146 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct 147 GGCGCGAAGCTACCATCCGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 200 >seq23114 Length=1019 Score = 84.2 bits (92), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || || | || | Sbjct 935 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCTTGGTCGATAGGCCAAT 878 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 877 GGTGCGAAGCTACCATCTGAGAGATTATGACTGAACGCCTCTAAGTCAGAATC 825 >seq27432 Length=793 Score = 77.0 bits (84), Expect = 5e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 793 CGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818734188544