Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20floridensis_20[genbank_20GCA_5F000751915.1_202014-06- 13] 58,696 sequences; 96,673,063 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq19946 392 1e-106 seq16076 343 4e-92 seq50515 118 3e-24 seq20094 77.0 1e-11 >seq19946 Length=1238 Score = 392 bits (434), Expect = 1e-106 Identities = 400/512 (78%), Gaps = 11/512 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || ||||| | || || ||||| | |||||||||| Sbjct 1180 GTACCCATTCCGATGACCGGCCTCATAAGAGAACGGTCTCGTTATTTTTCGTCACTACCT 1121 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || |||| | || |||||||||| ||||||||||||||||||| |||||| | || || Sbjct 1120 CCTCGTGCTGAGAGTGGGTAATTTTCGCGCCTGCTGCCTTCCTTAGATGTGTTCGCGATT 1061 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGT 179 |||||||| ||||||||| |||||||| |||| ||||||| ||| ||| |||||||| Sbjct 1060 TCTCAGGCGAACTCTCCGGAGCCGAACCCTTATTCTCCGTTACGCGT-GATCACCATGGT 1002 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || | || ||||||||||||||||||| |||||| | ||||| || | ||||||| Sbjct 1001 AGTCAGATACACTACCATCGAAAGTTGATACGGCAGATACTTGAAAGACACGTCGCCGGT 942 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC-CCCGAAGGGCGTTG 298 |||| ||||||||| | | ||||| ||||| ||| | || | | |||||| ||| Sbjct 941 GCAAGACCATGCGATCAGCTCAGTTACTATGAGTCAACCAGAAACAGCCGAAGCCGCTTG 882 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTA-GCATGTATTAGC 355 ||||| | |||||||||| ||| | | || || ||| | | ||| | |||||||||||| Sbjct 881 GTTTTGT-TCTAATAAATGCACTCTTCCCGTGAGGTCAGAGCTTTAATGCATGTATTAGC 823 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||| |||| | || | ||||| |||| ||| ||| Sbjct 822 TCTAGAATTACCACAGTTATCCAAGTAGGATTGTGTCAAGATCAAGTAAATTATAGCTGT 763 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 | ||||||||||||||| ||||||| | || || | ||||||||||||||||||||||| Sbjct 762 TATAATGAGCCATTCGCGGTTTCAC-GATTAAATCGTTTATACTTAGACATGCATGGCTT 704 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| ||||| || | | | ||||| Sbjct 703 AATCTTTGAGATAAGCACATCAGTTCAGGCAG 672 >seq16076 Length=1631 Score = 343 bits (380), Expect = 4e-92 Identities = 389/512 (76%), Gaps = 11/512 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| ||||||||| || | | | || ||| | || | ||||| | |||||||||| Sbjct 185 GTACCCATTCCAATGACCGGCCTCTAA-GAGAACGGTCTTGTTATTTCTCGTCACTACCT 243 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||| ||||| || || || ||| || Sbjct 244 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATT 303 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| || |||||||| ||||||||| || | ||||||||||| ||||||||| Sbjct 304 TCTCAGGCCCCTTCTCCGGAGTCGAACCCTTATCCTCCGTTACCCGTCACAACCATGGTA 363 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||||||||||| |||||| | ||||| || | ||||||| Sbjct 364 GTCACATACACTACCATCGAAAGTTGATAAGGCAGACACTTGAAAGATACGTCGCCGGTA 423 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA--GCCCCGAAGGGCG-TT 297 | || ||||||||| | | ||||||| ||| ||| ||| | | |||||||| || | Sbjct 424 CGAGACCATGCGATCAGCTTAGTTATTCTGAGTCAACAAAAAACGACCCGAAGGCCGCCT 483 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTC-GGGGTTTTTAGCATGTATTAG 354 |||||| | |||||||||| ||| | | ||| | ||| | | |||| ||||||||||| Sbjct 484 GGTTTTGT-TCTAATAAATGCACTCTTCCCGCAAGGTCAGAGCTTTTGTGCATGTATTAG 542 Query 355 CTCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||| |||||||| |||| | | ||||| |||| | | ||| Sbjct 543 CTCTAGAATTACCACAGTTATCCAAGTAGGATTTATCAAGATCAAGTAAATTACAGCTGT 602 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 | ||||||||| ||||| ||||||| || | || | || ||||| ||||||||||||| Sbjct 603 TGTAATGAGCCGTTCGCGGTTTCACGATA-AAATCGTTTGAACTTATACATGCATGGCTT 661 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| | || || | | | ||||| Sbjct 662 AATCTTTGAGATGAACACATCAGTTCAGGCAG 693 >seq50515 Length=279 Score = 118 bits (130), Expect = 3e-24 Identities = 94/112 (84%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 ||| || ||| |||||||||||||||||||||||| ||||| | || | | || | Sbjct 13 ATCTAAGGAACCGTAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTA-ATACGGCATG 71 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| | || |||||||||||||||||||||||||||||||||||||||||| Sbjct 72 TACTGACACGTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 123 >seq20094 Length=1226 Score = 77.0 bits (84), Expect = 1e-11 Identities = 116/160 (73%), Gaps = 5/160 (3%) Strand=Plus/Plus Query 347 TGTATTAGCTCTAGAATTACCAC--GGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 |||||||||||||| || |||| ||||||||| ||| | | ||||| |||| Sbjct 732 TGTATTAGCTCTAGCTTTTCCACAGAGTTATCCATTTAGATAATCAAGATCAAGTAAATC 791 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 || ||| | ||||||||| ||||| ||||| | || || | | ||| ||||| ||||| Sbjct 792 ATGGCTGTTGTAATGAGCCGTTCGCGGTTTCTC-GT-TAAAACGATTAAACTTATACATG 849 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| | ||||| ||||| | | || || | | | ||||| Sbjct 850 CAT-GTTTAATTTTTGAAATGAACACATCAGTTCAGGCAG 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509513455616