Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29]
3,450 sequences; 53,012,960 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq354 394 1e-107
seq3147 187 4e-45
seq2737 187 4e-45
seq803 187 4e-45
seq280 187 4e-45
seq166 187 4e-45
seq38 178 2e-42
seq2319 75.2 2e-11
>seq354
Length=3833
Score = 394 bits (436), Expect = 1e-107
Identities = 244/256 (95%), Gaps = 4/256 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 2560 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2503
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2443
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2442 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 2384
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2383 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 2324
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 2323 GCCATAGTCCCTCTAA 2308
>seq3147
Length=42808
Score = 187 bits (206), Expect = 4e-45
Identities = 180/223 (81%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| |
Sbjct 4725 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 4782
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | || ||||||||| | ||||| |||||| || |||||| | ||
Sbjct 4783 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 4842
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| ||| | || | |||||| | |||||||||||||||||
Sbjct 4843 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 4900
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 4901 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 4942
>seq2737
Length=44827
Score = 187 bits (206), Expect = 4e-45
Identities = 180/223 (81%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| |
Sbjct 27241 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 27184
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | || ||||||||| | ||||| |||||| || |||||| | ||
Sbjct 27183 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 27124
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| ||| | || | |||||| | |||||||||||||||||
Sbjct 27123 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 27066
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 27065 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 27024
>seq803
Length=9593
Score = 187 bits (206), Expect = 4e-45
Identities = 180/223 (81%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| |
Sbjct 7831 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 7774
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | || ||||||||| | ||||| |||||| || |||||| | ||
Sbjct 7773 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 7714
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| ||| | || | |||||| | |||||||||||||||||
Sbjct 7713 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 7656
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 7655 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 7614
>seq280
Length=2846
Score = 187 bits (206), Expect = 4e-45
Identities = 180/223 (81%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| |
Sbjct 218 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 161
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | || ||||||||| | ||||| |||||| || |||||| | ||
Sbjct 160 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 101
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| ||| | || | |||||| | |||||||||||||||||
Sbjct 100 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 43
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 42 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1
>seq166
Length=2306
Score = 187 bits (206), Expect = 4e-45
Identities = 180/223 (81%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| |
Sbjct 1634 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 1577
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | || ||||||||| | ||||| |||||| || |||||| | ||
Sbjct 1576 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 1517
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| |||| ||| | || | |||||| | |||||||||||||||||
Sbjct 1516 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 1459
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1458 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1417
>seq38
Length=2052
Score = 178 bits (196), Expect = 2e-42
Identities = 178/223 (80%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| |
Sbjct 1356 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 1413
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | || ||||||||| | ||||| |||||| || |||||| | ||
Sbjct 1414 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 1473
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||| |||| ||| | || | |||||| | |||||||||||||||||
Sbjct 1474 ACCCACCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 1531
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
||| | |||||||||||||||||||||||||||||| |||||
Sbjct 1532 ACCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1573
>seq2319
Length=17570
Score = 75.2 bits (82), Expect = 2e-11
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACT 51
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1649 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCACTTACT 1698
Score = 75.2 bits (82), Expect = 2e-11
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACT 51
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 3719 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCACTTACT 3768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751974866750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |