Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq354 394 1e-107 seq3147 187 4e-45 seq2737 187 4e-45 seq803 187 4e-45 seq280 187 4e-45 seq166 187 4e-45 seq38 178 2e-42 seq2319 75.2 2e-11 >seq354 Length=3833 Score = 394 bits (436), Expect = 1e-107 Identities = 244/256 (95%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 2560 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2503 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2502 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2443 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 2442 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 2384 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 2383 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 2324 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 2323 GCCATAGTCCCTCTAA 2308 >seq3147 Length=42808 Score = 187 bits (206), Expect = 4e-45 Identities = 180/223 (81%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| | Sbjct 4725 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 4782 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | || ||||||||| | ||||| |||||| || |||||| | || Sbjct 4783 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 4842 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| ||| | || | |||||| | ||||||||||||||||| Sbjct 4843 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 4900 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 4901 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 4942 >seq2737 Length=44827 Score = 187 bits (206), Expect = 4e-45 Identities = 180/223 (81%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| | Sbjct 27241 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 27184 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | || ||||||||| | ||||| |||||| || |||||| | || Sbjct 27183 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 27124 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| ||| | || | |||||| | ||||||||||||||||| Sbjct 27123 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 27066 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 27065 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 27024 >seq803 Length=9593 Score = 187 bits (206), Expect = 4e-45 Identities = 180/223 (81%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| | Sbjct 7831 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 7774 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | || ||||||||| | ||||| |||||| || |||||| | || Sbjct 7773 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 7714 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| ||| | || | |||||| | ||||||||||||||||| Sbjct 7713 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 7656 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 7655 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 7614 >seq280 Length=2846 Score = 187 bits (206), Expect = 4e-45 Identities = 180/223 (81%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| | Sbjct 218 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 161 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | || ||||||||| | ||||| |||||| || |||||| | || Sbjct 160 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 101 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| ||| | || | |||||| | ||||||||||||||||| Sbjct 100 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 43 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 42 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1 >seq166 Length=2306 Score = 187 bits (206), Expect = 4e-45 Identities = 180/223 (81%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| | Sbjct 1634 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 1577 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | || ||||||||| | ||||| |||||| || |||||| | || Sbjct 1576 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 1517 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| |||| ||| | || | |||||| | ||||||||||||||||| Sbjct 1516 ACCCGCCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 1459 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 1458 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1417 >seq38 Length=2052 Score = 178 bits (196), Expect = 2e-42 Identities = 178/223 (80%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| | Sbjct 1356 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCACTTACTTGGAATT-C 1413 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | || ||||||||| | ||||| |||||| || |||||| | || Sbjct 1414 CTCGTTCACGGAAAATAATTGCAATTTCCGATCCCAATCACGGCAAATTTTCAATGGTTT 1473 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| |||| ||| | || | |||||| | ||||||||||||||||| Sbjct 1474 ACCCACCCCTTTCGGGGTAGGACA-AG-CACGTTGATTTTGCCAGTGTAGCGCGCGTGCA 1531 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||| | |||||||||||||||||||||||||||||| ||||| Sbjct 1532 ACCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 1573 >seq2319 Length=17570 Score = 75.2 bits (82), Expect = 2e-11 Identities = 48/51 (94%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACT 51 |||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 1649 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCACTTACT 1698 Score = 75.2 bits (82), Expect = 2e-11 Identities = 48/51 (94%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACT 51 |||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 3719 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCACTTACT 3768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751974866750