Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq354 120 2e-25 seq166 80.6 1e-13 seq3147 77.0 2e-12 seq803 73.4 2e-11 >seq354 Length=3833 Score = 120 bits (132), Expect = 2e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| | Sbjct 2031 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 1973 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1972 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1915 >seq166 Length=2306 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| |||||||| |||| | ||| | || | | || ||| || | ||||| | Sbjct 1107 GAACCGGAAGACTTTCGTTTCCGGGAAGCTCCCCACCAAGGCAATATAACTCCATCGGCG 1048 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||||||| | |||| | ||||||||||||| |||||| Sbjct 1047 GATCGCTAGTTGGCATCGTTTACGGTCAGAACTAGGGCGGTATCTGATCGCCTTCGA 991 >seq3147 Length=42808 Score = 77.0 bits (84), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGT--AAGGTGCCGAGCGAGTCAAAATGATAAC-ATCG 57 ||||| |||||||| |||| ||| ||| | || | | || ||| || || | |||| Sbjct 5251 GAACCGGAAGACTTTCGTTTC-CGTGGAAGCTCCCCACCAAGGCAATATAATCTCCATCG 5309 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| ||||| ||||| ||||||||| | |||| | ||||||||||||| |||||| Sbjct 5310 GCGGATCGCTAGTTGGCATCGTTTACGGTCAGAACTAGGGCGGTATCTGATCGCCTTCGA 5369 >seq803 Length=9593 Score = 73.4 bits (80), Expect = 2e-11 Identities = 89/119 (75%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCG-AGCGAGTCAAAATGATAAC-ATCGC 58 ||||| |||||||| |||| | ||| | || | | || ||| || || | |||| Sbjct 7298 GAACCGGAAGACTTTCGTTTCCGGGAAGCTACCCCACCAAGGCAATATAATCTCCATCGG 7239 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| ||||| ||||| ||||||||| | |||| | ||||||||||||| |||||| Sbjct 7238 CGGATCGCTAGTTGGCATCGTTTACGGTCAGAACTAGGGCGGTATCTGATCGCCTTCGA 7180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278390995500