Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq354 233 4e-59 seq3147 138 2e-30 seq166 136 7e-30 seq803 125 1e-26 >seq354 Length=3833 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 1668 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1727 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 1728 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 1786 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 1787 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1846 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 1847 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 1905 Query 311 GTTAGGGG 318 ||| |||| Sbjct 1906 GTTGGGGG 1913 >seq3147 Length=42808 Score = 138 bits (152), Expect = 2e-30 Identities = 183/248 (74%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTG-TTCAAAGCAGGCCTTT--GCTCGAATACATTAGCAT 130 ||||||||||| |||| |||||| |||||| ||||| ||| ||| |||| |||| Sbjct 5615 TTTACTTTGAACAAATCAGAGTGCTTCAAA-CAGGCGTTTTCGCTTGAATGATCGTGCAT 5557 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||||||| | || | |||||| |||| ||||||| |||| | ||||| | Sbjct 5556 GGAATAATAGAAAACGATTT-CGGTTCAGTTTTATTGGTTTTACGGACTGAGATAATGGT 5498 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| || || | |||||| | |||| || |||||||||||||||||| Sbjct 5497 TAACAGAGACAAACGGGGGCATTTGTATGGCCCCGTGAGAGGTGAAATTCTTGGACCGTG 5438 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| |||||| |||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 5437 GCCAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAA 5379 Query 311 GTTAGGGG 318 || || || Sbjct 5378 GTCAGAGG 5371 >seq166 Length=2306 Score = 136 bits (150), Expect = 7e-30 Identities = 184/249 (74%), Gaps = 7/249 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTG-TTCAAAGCAGGCCTTT--GCTCGAATACATTAGCAT 130 ||||||||||| |||| |||||| |||||| ||||| ||| ||| |||| |||| Sbjct 744 TTTACTTTGAACAAATCAGAGTGCTTCAAA-CAGGCGTTTTCGCTTGAATGATCGTGCAT 802 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||||||| | || | |||||| |||| ||||||| |||| | ||||| | Sbjct 803 GGAATAATAGAAAACGATTT-CGGTTCAGTTTTATTGGTTTTACGGACTGAGATAATGGT 861 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| || || | |||||| | |||| || |||||||||||||||||| Sbjct 862 TAACAGAGACAAACGGGGGCATTTGTATGGCCCCGTGAGAGGTGAAATTCTTGGACCGTG 921 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGG-ATGTTTTCATTAATCAGTGAACGAA 309 |||| |||||| |||||||| || |||||| |||| ||||||||||| ||||||| Sbjct 922 GCCAGACAAACTACAGCGAAAGCATTTGCCAAGGAATGTCTTCATTAATCA-AGAACGAA 980 Query 310 AGTTAGGGG 318 ||| || || Sbjct 981 AGTCAGAGG 989 >seq803 Length=9593 Score = 125 bits (138), Expect = 1e-26 Identities = 183/250 (73%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTG-TTCAAAGCAGGCCTTT--GCTCGAATACATTAGCAT 130 ||||||||||| |||| |||||| |||||| ||||| ||| ||| |||| |||| Sbjct 6931 TTTACTTTGAACAAATCAGAGTGCTTCAAA-CAGGCGTTTTCGCTTGAATGATCGTGCAT 6989 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||||||| | || | |||||| |||| ||||||| |||| | ||||| | Sbjct 6990 GGAATAATAGAAAACGATTT-CGGTTCAGTTTTATTGGTTTTACGGACTGAGATAATGGT 7048 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| || || | |||||| | |||| || |||||||||||||||||| Sbjct 7049 TAACAGAGACAAACGGGGGCATTTGTATGGCCCCGTGAGAGGTGAAATTCTTGGACCGTG 7108 Query 251 TGAAGACTAA-CTACTGCGAAAGC-GTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||| || |||| |||||||| || ||||| |||| ||||||||||| |||||| Sbjct 7109 GCCAGACAAACCTACAGCGAAAGCATTTTGCCAAGAATGTCTTCATTAATCA-AGAACGA 7167 Query 309 AAGTTAGGGG 318 |||| || || Sbjct 7168 AAGTCAGAGG 7177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915168425600