Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3147 80.6 7e-13 seq3063 80.6 7e-13 seq2736 80.6 7e-13 seq1045 80.6 7e-13 seq260 80.6 7e-13 >seq3147 Length=42808 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 1505 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 1564 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168 || || ||||| |||||||||||| | |||| |||||| Sbjct 1565 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 1604 >seq3063 Length=44068 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 795 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 736 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168 || || ||||| |||||||||||| | |||| |||||| Sbjct 735 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 696 >seq2736 Length=14981 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 12462 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 12521 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168 || || ||||| |||||||||||| | |||| |||||| Sbjct 12522 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 12561 >seq1045 Length=14645 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 13000 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 13059 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168 || || ||||| |||||||||||| | |||| |||||| Sbjct 13060 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 13099 >seq260 Length=2701 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 2366 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 2307 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168 || || ||||| |||||||||||| | |||| |||||| Sbjct 2306 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 2267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260756502400