Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29]
3,450 sequences; 53,012,960 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq3147 80.6 7e-13
seq3063 80.6 7e-13
seq2736 80.6 7e-13
seq1045 80.6 7e-13
seq260 80.6 7e-13
>seq3147
Length=42808
Score = 80.6 bits (88), Expect = 7e-13
Identities = 79/101 (78%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| ||
Sbjct 1505 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 1564
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168
|| || ||||| |||||||||||| | |||| ||||||
Sbjct 1565 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 1604
>seq3063
Length=44068
Score = 80.6 bits (88), Expect = 7e-13
Identities = 79/101 (78%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| ||
Sbjct 795 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 736
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168
|| || ||||| |||||||||||| | |||| ||||||
Sbjct 735 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 696
>seq2736
Length=14981
Score = 80.6 bits (88), Expect = 7e-13
Identities = 79/101 (78%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| ||
Sbjct 12462 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 12521
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168
|| || ||||| |||||||||||| | |||| ||||||
Sbjct 12522 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 12561
>seq1045
Length=14645
Score = 80.6 bits (88), Expect = 7e-13
Identities = 79/101 (78%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| ||
Sbjct 13000 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 13059
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168
|| || ||||| |||||||||||| | |||| ||||||
Sbjct 13060 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 13099
>seq260
Length=2701
Score = 80.6 bits (88), Expect = 7e-13
Identities = 79/101 (78%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| ||
Sbjct 2366 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 2307
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 168
|| || ||||| |||||||||||| | |||| ||||||
Sbjct 2306 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-AATCAAG 2267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260756502400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |