Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29]
3,450 sequences; 53,012,960 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq3147 82.4 2e-13
seq3063 82.4 2e-13
seq2736 82.4 2e-13
seq1045 82.4 2e-13
seq260 82.4 2e-13
>seq3147
Length=42808
Score = 82.4 bits (90), Expect = 2e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108
||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| ||||
Sbjct 1492 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 1551
Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156
||||||||| || || |||||||| ||||||||||| | ||||||
Sbjct 1552 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 1599
>seq3063
Length=44068
Score = 82.4 bits (90), Expect = 2e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108
||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| ||||
Sbjct 808 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 749
Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156
||||||||| || || |||||||| ||||||||||| | ||||||
Sbjct 748 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 701
>seq2736
Length=14981
Score = 82.4 bits (90), Expect = 2e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108
||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| ||||
Sbjct 12449 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 12508
Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156
||||||||| || || |||||||| ||||||||||| | ||||||
Sbjct 12509 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 12556
>seq1045
Length=14645
Score = 82.4 bits (90), Expect = 2e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108
||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| ||||
Sbjct 12987 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 13046
Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156
||||||||| || || |||||||| ||||||||||| | ||||||
Sbjct 13047 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 13094
>seq260
Length=2701
Score = 82.4 bits (90), Expect = 2e-13
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108
||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| ||||
Sbjct 2379 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 2320
Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156
||||||||| || || |||||||| ||||||||||| | ||||||
Sbjct 2319 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 2272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062363347200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |