Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3147 82.4 2e-13 seq3063 82.4 2e-13 seq2736 82.4 2e-13 seq1045 82.4 2e-13 seq260 82.4 2e-13 >seq3147 Length=42808 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108 ||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| |||| Sbjct 1492 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 1551 Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||| || || |||||||| ||||||||||| | |||||| Sbjct 1552 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 1599 >seq3063 Length=44068 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108 ||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| |||| Sbjct 808 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 749 Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||| || || |||||||| ||||||||||| | |||||| Sbjct 748 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 701 >seq2736 Length=14981 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108 ||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| |||| Sbjct 12449 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 12508 Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||| || || |||||||| ||||||||||| | |||||| Sbjct 12509 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 12556 >seq1045 Length=14645 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108 ||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| |||| Sbjct 12987 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 13046 Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||| || || |||||||| ||||||||||| | |||||| Sbjct 13047 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 13094 >seq260 Length=2701 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTC 108 ||||||| | ||||| || |||||||| ||||| | ||| ||||| ||| |||| Sbjct 2379 GACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTG 2320 Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAA 156 ||||||||| || || |||||||| ||||||||||| | |||||| Sbjct 2319 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAA 2272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062363347200