Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29]
3,450 sequences; 53,012,960 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq354 307 2e-81
seq38 242 6e-62
seq803 228 1e-57
seq166 219 7e-55
seq3147 217 2e-54
seq2737 102 1e-19
seq280 89.7 8e-16
>seq354
Length=3833
Score = 307 bits (340), Expect = 2e-81
Identities = 224/259 (86%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2417 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2358
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | || | | | ||||||||||||||||||| |||
Sbjct 2357 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 2298
Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
|| | || | | |||| |||||||| | ||||||||||||||| |||||||
Sbjct 2297 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 2238
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 2178
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 2177 AAAGAGCTCTCAGTCTGTC 2159
>seq38
Length=2052
Score = 242 bits (268), Expect = 6e-62
Identities = 204/244 (84%), Gaps = 6/244 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1514 CAGTGTAGCGCGCGTGCAACCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 1572
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC--AGCCACCAACCATAGTC 134
| ||| | ||||| ||||| | ||||||||||||||| | ||| | ||| |
Sbjct 1573 AT-TTCTTTCGGCTGAAAGCCGCAAATCCCTCTAAGAAGCCGAATACACGTAAAATATGC 1631
Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194
|| | |||||||| |||||| |||||| ||||||||||||| |||||||||||||||
Sbjct 1632 -ATCAG-CTATTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCAC 1689
Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||| ||||||||||||||||||||||||| ||| |||||| |||| |||||||||||
Sbjct 1690 TCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAGCTATCAATC 1749
Query 255 TGTC 258
||||
Sbjct 1750 TGTC 1753
>seq803
Length=9593
Score = 228 bits (252), Expect = 1e-57
Identities = 200/245 (82%), Gaps = 8/245 (3%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||
Sbjct 7673 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 7615
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| ||| | ||||| | || | |||||||||||||| || |||| |
Sbjct 7614 AT-TTCTTTCGGCTGAACACCGCAAATCCCTCTAAGAAGCTGTATACA---CATAAATTA 7559
Query 137 TGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
|| ||||||||| |||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 7558 TGTACCAGCTATTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCA 7499
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||| ||||||||||||||||||||||||| ||| |||||| |||| ||||||||||
Sbjct 7498 CTCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAGCTATCAAT 7439
Query 254 CTGTC 258
|||||
Sbjct 7438 CTGTC 7434
>seq166
Length=2306
Score = 219 bits (242), Expect = 7e-55
Identities = 203/248 (82%), Gaps = 12/248 (5%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1476 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 1418
Query 77 AACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCC--AGCCACCAACCATA-G 132
| ||| | ||||| | | || | |||||||||||||| | ||| | || |
Sbjct 1417 AT-TTCTTTCGGCTGAACACCCGCAAATCCCTCTAAGAAGCTGTATACACGTAAATTATG 1359
Query 133 T-CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191
| | | ||||||||| |||||| |||||| ||||||||||||| ||||||||||||
Sbjct 1358 TACCA----GCTATTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAAT 1303
Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG-AAAGAGCTATC 250
|||||||| ||||||||||||||||||||||||| ||| |||||| | ||| |||||||
Sbjct 1302 CACTCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAAGCTATC 1243
Query 251 AATCTGTC 258
||||||||
Sbjct 1242 AATCTGTC 1235
>seq3147
Length=42808
Score = 217 bits (240), Expect = 2e-54
Identities = 199/246 (81%), Gaps = 9/246 (4%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||
Sbjct 4883 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 4941
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| ||| | ||||| | || | |||||||||||||| || |||| |
Sbjct 4942 AT-TTCTTTCGGCTGAACACCGCAAATCCCTCTAAGAAGCTGTATACA---CATAAATTA 4997
Query 137 TGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
|| |||| |||| |||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 4998 TGTACCAGCTAGTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCA 5057
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA-TCAA 252
|||||| ||||||||||||||||||||||||| ||| |||||| |||| ||||| ||||
Sbjct 5058 CTCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAGCTATTCAA 5117
Query 253 TCTGTC 258
||||||
Sbjct 5118 TCTGTC 5123
>seq2737
Length=44827
Score = 102 bits (112), Expect = 1e-19
Identities = 84/100 (84%), Gaps = 2/100 (2%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 27083 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC- 27026
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116
|| ||| | ||||| | || | ||||||||||||||
Sbjct 27025 AATTTCTTTCGGCTGAACACCGCAAATCCCTCTAAGAAGC 26986
>seq280
Length=2846
Score = 89.7 bits (98), Expect = 8e-16
Identities = 57/61 (93%), Gaps = 1/61 (2%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||
Sbjct 60 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 2
Query 77 A 77
|
Sbjct 1 A 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796773369450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |