Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq354 307 2e-81 seq38 242 6e-62 seq803 228 1e-57 seq166 219 7e-55 seq3147 217 2e-54 seq2737 102 1e-19 seq280 89.7 8e-16 >seq354 Length=3833 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2417 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2358 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 2357 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 2298 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 2297 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 2238 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2237 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 2178 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 2177 AAAGAGCTCTCAGTCTGTC 2159 >seq38 Length=2052 Score = 242 bits (268), Expect = 6e-62 Identities = 204/244 (84%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||| Sbjct 1514 CAGTGTAGCGCGCGTGCAACCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 1572 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC--AGCCACCAACCATAGTC 134 | ||| | ||||| ||||| | ||||||||||||||| | ||| | ||| | Sbjct 1573 AT-TTCTTTCGGCTGAAAGCCGCAAATCCCTCTAAGAAGCCGAATACACGTAAAATATGC 1631 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 || | |||||||| |||||| |||||| ||||||||||||| ||||||||||||||| Sbjct 1632 -ATCAG-CTATTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCAC 1689 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||| ||||||||||||||||||||||||| ||| |||||| |||| ||||||||||| Sbjct 1690 TCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAGCTATCAATC 1749 Query 255 TGTC 258 |||| Sbjct 1750 TGTC 1753 >seq803 Length=9593 Score = 228 bits (252), Expect = 1e-57 Identities = 200/245 (82%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 7673 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 7615 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | ||| | ||||| | || | |||||||||||||| || |||| | Sbjct 7614 AT-TTCTTTCGGCTGAACACCGCAAATCCCTCTAAGAAGCTGTATACA---CATAAATTA 7559 Query 137 TGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 || ||||||||| |||||| |||||| ||||||||||||| |||||||||||||| Sbjct 7558 TGTACCAGCTATTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCA 7499 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||| ||||||||||||||||||||||||| ||| |||||| |||| |||||||||| Sbjct 7498 CTCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAGCTATCAAT 7439 Query 254 CTGTC 258 ||||| Sbjct 7438 CTGTC 7434 >seq166 Length=2306 Score = 219 bits (242), Expect = 7e-55 Identities = 203/248 (82%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 1476 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 1418 Query 77 AACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCC--AGCCACCAACCATA-G 132 | ||| | ||||| | | || | |||||||||||||| | ||| | || | Sbjct 1417 AT-TTCTTTCGGCTGAACACCCGCAAATCCCTCTAAGAAGCTGTATACACGTAAATTATG 1359 Query 133 T-CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | ||||||||| |||||| |||||| ||||||||||||| |||||||||||| Sbjct 1358 TACCA----GCTATTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAAT 1303 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG-AAAGAGCTATC 250 |||||||| ||||||||||||||||||||||||| ||| |||||| | ||| ||||||| Sbjct 1302 CACTCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAAGCTATC 1243 Query 251 AATCTGTC 258 |||||||| Sbjct 1242 AATCTGTC 1235 >seq3147 Length=42808 Score = 217 bits (240), Expect = 2e-54 Identities = 199/246 (81%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 4883 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 4941 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | ||| | ||||| | || | |||||||||||||| || |||| | Sbjct 4942 AT-TTCTTTCGGCTGAACACCGCAAATCCCTCTAAGAAGCTGTATACA---CATAAATTA 4997 Query 137 TGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 || |||| |||| |||||| |||||| ||||||||||||| |||||||||||||| Sbjct 4998 TGTACCAGCTAGTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCA 5057 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA-TCAA 252 |||||| ||||||||||||||||||||||||| ||| |||||| |||| ||||| |||| Sbjct 5058 CTCCACGAACTAAGAACGGCCATGCACCACCATCCACTGAATCATGAAAAAGCTATTCAA 5117 Query 253 TCTGTC 258 |||||| Sbjct 5118 TCTGTC 5123 >seq2737 Length=44827 Score = 102 bits (112), Expect = 1e-19 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 27083 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC- 27026 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 || ||| | ||||| | || | |||||||||||||| Sbjct 27025 AATTTCTTTCGGCTGAACACCGCAAATCCCTCTAAGAAGC 26986 >seq280 Length=2846 Score = 89.7 bits (98), Expect = 8e-16 Identities = 57/61 (93%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | |||||||||||||||||||||||||||||| |||| Sbjct 60 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 2 Query 77 A 77 | Sbjct 1 A 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796773369450