Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3147 78.8 3e-12 seq3063 78.8 3e-12 seq2736 78.8 3e-12 seq1045 78.8 3e-12 seq260 78.8 3e-12 >seq3147 Length=42808 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 1505 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 1564 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || |||||||| ||||||||||| | |||| Sbjct 1565 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 1597 >seq3063 Length=44068 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 795 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 736 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || |||||||| ||||||||||| | |||| Sbjct 735 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 703 >seq2736 Length=14981 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 12462 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 12521 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || |||||||| ||||||||||| | |||| Sbjct 12522 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 12554 >seq1045 Length=14645 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 13000 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 13059 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || |||||||| ||||||||||| | |||| Sbjct 13060 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 13092 >seq260 Length=2701 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| |||||||||| ||||| | ||| ||||| ||| |||| ||||||||| || Sbjct 2366 TCGTTGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAG 2307 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || |||||||| ||||||||||| | |||| Sbjct 2306 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 2274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702341267200