Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq27688 116 3e-21 seq3049 116 3e-21 seq2786 113 4e-20 seq13787 111 1e-19 seq27347 107 2e-18 >seq27688 Length=2484 Score = 116 bits (128), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 168 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 226 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || |||||| |||| ||| |||| ||||| ||||| ||||| Sbjct 227 CATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 286 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || ||||||| || ||||| || ||||| || || || || || Sbjct 287 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGA 346 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 || || | ||| | ||||||||| ||| || ||| ||| Sbjct 347 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 387 >seq3049 Length=15854 Score = 116 bits (128), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 13986 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 13928 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || |||||| |||| ||| |||| ||||| ||||| ||||| Sbjct 13927 TATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 13868 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || ||||||| || ||||| || ||||| || || || || || Sbjct 13867 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGA 13808 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 || || | ||| | ||||||||| ||| || ||| ||| Sbjct 13807 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 13767 >seq2786 Length=16508 Score = 113 bits (124), Expect = 4e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 4380 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 4322 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || |||||| |||| || |||| ||||| ||||| ||||| Sbjct 4321 CATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAATTTTTTG 4262 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || ||||||| || ||||| || ||||| || || || || || Sbjct 4261 GCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGAGA 4202 Query 61614 CGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 || || | ||| | ||||||||| ||| || ||| ||| Sbjct 4201 TGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 4161 >seq13787 Length=5932 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||||| |||||||| |||| ||||| | |||| | ||| ||||||||||||| | Sbjct 963 AAAGCTGATTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCT 905 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | ||| |||||| |||| ||| |||| ||||| ||||| ||||| Sbjct 904 CATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTG 845 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | |||||||| || |||||| || ||||| || ||||| || || || || || Sbjct 844 GCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGAGA 785 Query 61614 CGAGGGCATGCATTGTGATTTTGCT 61638 || || | ||| | ||||||||| Sbjct 784 TGAAGGACTTCATCGAGATTTTGCT 760 >seq27347 Length=2531 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 61443 TTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||| |||| ||||| | |||| | ||| ||||||||||||| | | || | Sbjct 1 TTGGGCTCTTCG-TTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCTTATTGCTT 59 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || |||||| |||| ||| |||| ||||| ||||| |||||| | |||| Sbjct 60 TTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGA 119 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 |||| || ||||||| || ||||| || ||||| || || || || || || || Sbjct 120 AACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGATGAAGGAC 179 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 | ||| | ||||||||| ||| || ||| ||| Sbjct 180 TTCATCGAGATTTTGCTTGTTTACTTTTCCAAC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416141572240