Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20]
11,864 sequences; 244,075,060 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq11554 107 3e-21
seq4202 84.2 3e-14
>seq11554
Length=88251
Score = 107 bits (118), Expect = 3e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||| | ||||| ||||||||||||| || ||||||||| |||||| |
Sbjct 70152 CTATTTAGCAGGCTGGAATCTCGCTCGTTATCGGAATAAAAAAGACAAATCGCTCCACTA 70093
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| || |||| |||| |||| ||||||||| |||||||||
Sbjct 70092 ACTAAGAACGACCACACAAGACCAACCATCAAATCGAGAAAGAGCATCCAATCTGTC 70036
>seq4202
Length=1523
Score = 84.2 bits (92), Expect = 3e-14
Identities = 93/122 (76%), Gaps = 8/122 (7%)
Strand=Plus/Minus
Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG-AA 209
|||||| ||||||| | ||||||| |||||| |||| |||||| ||||| ||| ||
Sbjct 1229 AGGTTAGGGTCTCGCTAGTTATCGAAATTAATCAGAAAAATCAATCCACTCACTTCCCAA 1170
Query 210 CGGCCATGCACCAC------CACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCC 263
|||||||||| || || || ||||||||||||||||| || |||||| | ||
Sbjct 1169 AGGCCATGCACTACATTTAACAAGCACAGAATCAAGAAAGAGCT-GCAGTCTGTCTTTCC 1111
Query 264 TC 265
||
Sbjct 1110 TC 1109
Score = 82.4 bits (90), Expect = 1e-13
Identities = 79/100 (79%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
|||||||| | ||||| |||||||||||||||| ||||||| ||||| |||| |||
Sbjct 1431 TCAGTGTATCACGCGTATAGCCCAGAACATCTAAGAGCATCACGGACCTTTTATCGCCCT 1372
Query 76 AAACTTCCATTGGCTGGAAGCCA-ATAGTCCCTCTAAGAA 114
|| |||||| ||| || || |||||||||||||||
Sbjct 1371 AAGCTTCCACATGCTAAAACACATGTAGTCCCTCTAAGAA 1332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796708421784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |