Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq11554 107 3e-21 seq4202 84.2 3e-14 >seq11554 Length=88251 Score = 107 bits (118), Expect = 3e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| | ||||| ||||||||||||| || ||||||||| |||||| | Sbjct 70152 CTATTTAGCAGGCTGGAATCTCGCTCGTTATCGGAATAAAAAAGACAAATCGCTCCACTA 70093 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| || |||| |||| |||| ||||||||| ||||||||| Sbjct 70092 ACTAAGAACGACCACACAAGACCAACCATCAAATCGAGAAAGAGCATCCAATCTGTC 70036 >seq4202 Length=1523 Score = 84.2 bits (92), Expect = 3e-14 Identities = 93/122 (76%), Gaps = 8/122 (7%) Strand=Plus/Minus Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG-AA 209 |||||| ||||||| | ||||||| |||||| |||| |||||| ||||| ||| || Sbjct 1229 AGGTTAGGGTCTCGCTAGTTATCGAAATTAATCAGAAAAATCAATCCACTCACTTCCCAA 1170 Query 210 CGGCCATGCACCAC------CACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCC 263 |||||||||| || || || ||||||||||||||||| || |||||| | || Sbjct 1169 AGGCCATGCACTACATTTAACAAGCACAGAATCAAGAAAGAGCT-GCAGTCTGTCTTTCC 1111 Query 264 TC 265 || Sbjct 1110 TC 1109 Score = 82.4 bits (90), Expect = 1e-13 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||| | ||||| |||||||||||||||| ||||||| ||||| |||| ||| Sbjct 1431 TCAGTGTATCACGCGTATAGCCCAGAACATCTAAGAGCATCACGGACCTTTTATCGCCCT 1372 Query 76 AAACTTCCATTGGCTGGAAGCCA-ATAGTCCCTCTAAGAA 114 || |||||| ||| || || ||||||||||||||| Sbjct 1371 AAGCTTCCACATGCTAAAACACATGTAGTCCCTCTAAGAA 1332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796708421784