Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10703 277 3e-72 seq1970 165 1e-38 seq2715 152 9e-35 seq1169 131 3e-28 seq854 77.0 6e-12 >seq10703 Length=106990 Score = 277 bits (306), Expect = 3e-72 Identities = 221/263 (84%), Gaps = 5/263 (2%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| || |||||||||||||||| ||||| |||||||||||||||||||||| |||| Sbjct 41884 GTCAACACTAGGGTAAAACTAACCC-TCTCACGACGGTCTAAACCCAGCTCACGAGCCCT 41826 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||| ||| |||||||||||||| | | |||||||||||| |||||| |||||| || Sbjct 41825 ATTATGGGGCGAACAATCCAACGCCTGGCAAATTCTGCTTCGCAATGATACGAAGAGTCG 41766 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||| |||||||||||||||| |||| ||||| ||||||||||||||||| |||||||| Sbjct 41765 ACATTGAAGGATCAAAAAGCAGCGTCACTATGGACGCTTGGCTGCCACAAACCAGTTATA 41706 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGAT 267 |||| |||| |||||||| ||||||| || ||| || || | ||||||||||| Sbjct 41705 CCTGGGGTAGCTTTTCTGACACCTCTTACCAGAAACTATTTGAATTA--AAAGGATCGAT 41648 Query 268 AGGCCACACTTTCATGGTTTGTA 290 ||||||| ||||| ||||||||| Sbjct 41647 AGGCCACGCTTTCGTGGTTTGTA 41625 >seq1970 Length=217548 Score = 165 bits (182), Expect = 1e-38 Identities = 191/251 (76%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||| | |||| | ||||||||||| | | |||||||||| | || || ||||||| Sbjct 37966 TCAACAGCAAGGTAGA-CTAACCTGTCTTACGGCGGTCTAAACTCCGCACATATTCCCTA 38024 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| || |||||||| ||| | || ||||||||||||| |||||| ||||||| || Sbjct 38025 TTATAGGATGAACAATGCAATG-TTTGCGAATTCTGCTTCACAATGATAAGAAGAGCTGA 38083 Query 151 CATC--GAAGGATCAAAAAGCAACGTCGCT---ATGAACGCTTGGCTGCCACAAGCCAGT 205 |||| |||| | |||||||||||||||| | | | ||||||||||||||| | | | Sbjct 38084 CATCAAAAAGGGTTAAAAAGCAACGTCGCTAAAACGGATGCTTGGCTGCCACAACCAAAT 38143 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGAT 263 ||||||||| || ||||||| ||||| | | ||| || || | ||||||| Sbjct 38144 TATCCCTGTCCTAGTTTTTCTGACACCTTTTACTAGAAACGTTCTGAATTA--AAAGGAT 38201 Query 264 CGATAGGCCAC 274 ||||||||||| Sbjct 38202 CGATAGGCCAC 38212 >seq2715 Length=180308 Score = 152 bits (168), Expect = 9e-35 Identities = 127/154 (82%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 82 CGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG 141 ||| | || || || | || | |||| ||||||| |||||||| || || |||||||| Sbjct 2167 CGTCCTCTGTTTGTAGATGTAGAATCTAACGCTTGGCGAATTCTACTGCGCAATGATAGG 2226 Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 || |||| |||||||| |||||||||| |||| ||||||| || |||||||||||||| | Sbjct 2227 AAAAGCCCACATCGAAAGATCAAAAAGAAACGCCGCTATGGACTCTTGGCTGCCACAA-C 2285 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 | |||||||||||| |||||||||||| | |||| Sbjct 2286 CGGTTATCCCTGTGATAACTTTTCTGGTAGCTCT 2319 >seq1169 Length=1810348 Score = 131 bits (144), Expect = 3e-28 Identities = 112/130 (86%), Gaps = 9/130 (7%) Strand=Plus/Minus Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT-C 162 |||||| |||| |||||||||||||| |||||||||| ||||||||||||||||| | Sbjct 1212752 AATCCA--GCTTGGCGAATTCTGCTTCGCAATGATAGGAAAAGCCGACATCGAAGGATAC 1212695 Query 163 AAAAAG-CAACGTCGCTATGAACG-CTTGGCTGCCAC-AAGCCAGTTA-TCCCTGT--GG 216 |||| | ||||||||||||| ||| |||||||||||| |||||||||| ||||||| | Sbjct 1212694 AAAATGACAACGTCGCTATGGACGTCTTGGCTGCCACGAAGCCAGTTACTCCCTGTCGGT 1212635 Query 217 TAACTTTTCT 226 |||| ||||| Sbjct 1212634 TAACCTTTCT 1212625 >seq854 Length=23986 Score = 77.0 bits (84), Expect = 6e-12 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 10276 GATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCA 10232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854298633984