Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20]
11,864 sequences; 244,075,060 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq10703 277 3e-72
seq1970 165 1e-38
seq2715 152 9e-35
seq1169 131 3e-28
seq854 77.0 6e-12
>seq10703
Length=106990
Score = 277 bits (306), Expect = 3e-72
Identities = 221/263 (84%), Gaps = 5/263 (2%)
Strand=Plus/Minus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| || |||||||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct 41884 GTCAACACTAGGGTAAAACTAACCC-TCTCACGACGGTCTAAACCCAGCTCACGAGCCCT 41826
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||| ||| |||||||||||||| | | |||||||||||| |||||| |||||| ||
Sbjct 41825 ATTATGGGGCGAACAATCCAACGCCTGGCAAATTCTGCTTCGCAATGATACGAAGAGTCG 41766
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||| |||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||
Sbjct 41765 ACATTGAAGGATCAAAAAGCAGCGTCACTATGGACGCTTGGCTGCCACAAACCAGTTATA 41706
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGAT 267
|||| |||| |||||||| ||||||| || ||| || || | |||||||||||
Sbjct 41705 CCTGGGGTAGCTTTTCTGACACCTCTTACCAGAAACTATTTGAATTA--AAAGGATCGAT 41648
Query 268 AGGCCACACTTTCATGGTTTGTA 290
||||||| ||||| |||||||||
Sbjct 41647 AGGCCACGCTTTCGTGGTTTGTA 41625
>seq1970
Length=217548
Score = 165 bits (182), Expect = 1e-38
Identities = 191/251 (76%), Gaps = 11/251 (4%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||| ||| | |||| | ||||||||||| | | |||||||||| | || || |||||||
Sbjct 37966 TCAACAGCAAGGTAGA-CTAACCTGTCTTACGGCGGTCTAAACTCCGCACATATTCCCTA 38024
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||| || |||||||| ||| | || ||||||||||||| |||||| ||||||| ||
Sbjct 38025 TTATAGGATGAACAATGCAATG-TTTGCGAATTCTGCTTCACAATGATAAGAAGAGCTGA 38083
Query 151 CATC--GAAGGATCAAAAAGCAACGTCGCT---ATGAACGCTTGGCTGCCACAAGCCAGT 205
|||| |||| | |||||||||||||||| | | | ||||||||||||||| | | |
Sbjct 38084 CATCAAAAAGGGTTAAAAAGCAACGTCGCTAAAACGGATGCTTGGCTGCCACAACCAAAT 38143
Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGAT 263
||||||||| || ||||||| ||||| | | ||| || || | |||||||
Sbjct 38144 TATCCCTGTCCTAGTTTTTCTGACACCTTTTACTAGAAACGTTCTGAATTA--AAAGGAT 38201
Query 264 CGATAGGCCAC 274
|||||||||||
Sbjct 38202 CGATAGGCCAC 38212
>seq2715
Length=180308
Score = 152 bits (168), Expect = 9e-35
Identities = 127/154 (82%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 82 CGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG 141
||| | || || || | || | |||| ||||||| |||||||| || || ||||||||
Sbjct 2167 CGTCCTCTGTTTGTAGATGTAGAATCTAACGCTTGGCGAATTCTACTGCGCAATGATAGG 2226
Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201
|| |||| |||||||| |||||||||| |||| ||||||| || |||||||||||||| |
Sbjct 2227 AAAAGCCCACATCGAAAGATCAAAAAGAAACGCCGCTATGGACTCTTGGCTGCCACAA-C 2285
Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235
| |||||||||||| |||||||||||| | ||||
Sbjct 2286 CGGTTATCCCTGTGATAACTTTTCTGGTAGCTCT 2319
>seq1169
Length=1810348
Score = 131 bits (144), Expect = 3e-28
Identities = 112/130 (86%), Gaps = 9/130 (7%)
Strand=Plus/Minus
Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT-C 162
|||||| |||| |||||||||||||| |||||||||| ||||||||||||||||| |
Sbjct 1212752 AATCCA--GCTTGGCGAATTCTGCTTCGCAATGATAGGAAAAGCCGACATCGAAGGATAC 1212695
Query 163 AAAAAG-CAACGTCGCTATGAACG-CTTGGCTGCCAC-AAGCCAGTTA-TCCCTGT--GG 216
|||| | ||||||||||||| ||| |||||||||||| |||||||||| ||||||| |
Sbjct 1212694 AAAATGACAACGTCGCTATGGACGTCTTGGCTGCCACGAAGCCAGTTACTCCCTGTCGGT 1212635
Query 217 TAACTTTTCT 226
|||| |||||
Sbjct 1212634 TAACCTTTCT 1212625
>seq854
Length=23986
Score = 77.0 bits (84), Expect = 6e-12
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 10276 GATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCA 10232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854298633984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |