Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1569 205 3e-50 seq10703 174 5e-41 seq1938 150 6e-34 seq1970 120 1e-24 seq2715 105 2e-20 seq6420 102 3e-19 seq11573 82.4 2e-13 >seq1569 Length=5773 Score = 205 bits (226), Expect = 3e-50 Identities = 154/181 (85%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 |||||| ||||||| |||||||| ||||||||||||| | |||||||||||| |||||| Sbjct 2949 CCAAGCTCGTTCCCATGGCTGTGATTTCGCTAGATAGCAATTAGGGACAGTGGAAATCTC 2890 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||||||||||||| |||| ||| || |||| |||||||||||||| ||||||||| |||| Sbjct 2889 GTTAATCCATTCAAGCGCATCAATAGTTAGCTGACGAGGCATTTGACTACCTTAAAAGAG 2830 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 ||||||||| || |||||||||| ||||||| | | || || | ||| ||||||||| Sbjct 2829 TCATAGTTATTCTCGCCGTTTACTCGCGCTTACTCTACTTACTACGATTTAACATTCAGA 2770 Query 504 G 504 | Sbjct 2769 G 2769 >seq10703 Length=106990 Score = 174 bits (192), Expect = 5e-41 Identities = 291/412 (71%), Gaps = 34/412 (8%) Strand=Plus/Minus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||||||||||||| ||| |||| || ||| | || ||||||||||||||||||| Sbjct 41589 TCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTAAGCTAGCCTTAGGACACCTGCGTTAC 41530 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT-------GACAATGTCAT--C 116 | ||| |||||||| |||| |||| |||||||| | || || | | || | Sbjct 41529 GATTTGACAGATGTACCGCTCCAGTCAAACTCCACGCCGTCTCGGCGAGAGTAGCAATGC 41470 Query 117 AACCCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCC 176 ||| || | | || | ||| || | | |||| | | ||| || | || Sbjct 41469 CACCAGG-TGGCTTTGCATAAGAC---AAAGAAAAAAAAAGCT----GAAACTCAAT-CC 41419 Query 177 GCTTCATTG--ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-CGAAA 233 |||| | | |||||||| || |||| | || ||||| ||||| | ||| |||| Sbjct 41418 TCTTCTTACCAAATAAGTAAAGAATCGATGAAAGTGGTGGT-TTTCATTGGCGATCGAA- 41361 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||| ||| || |||||||| ||| | | ||||||| ||| |||||||||| ||| Sbjct 41360 -GTCTCTCACCCATGCTACACCTTTCATGACTGTTCACAATGTCAAACTAGAGTCAGGCT 41302 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||| |||| | ||| || || |||| |||||||| |||||||||||| Sbjct 41301 CAACCGGGTTATTTTTT--------TTTCG--AAGCTTATTCCCTTGACTGTGGTTTCGC 41252 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||||| ||| |||||||||||||||||||||||| |||||||||||| Sbjct 41251 TAGATAGTAGTTAGAGACAGTGGGAATCTCGTTAATCCACTCATGCGCGTCA 41200 >seq1938 Length=219830 Score = 150 bits (166), Expect = 6e-34 Identities = 109/125 (87%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339 ||||||||||||||||||||||||| ||| ||||||| || ||||||||||| |||| Sbjct 53416 ACTAGAGTCAAGCTCAACAGGGTCTACTT-CCCCGCTATTTTTTCCAAGCCCGTTGCCTT 53358 Query 340 GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399 |||||||||| || || ||||||| |||| ||||||| | |||||||||||||||||| | Sbjct 53357 GGCTGTGGTTCCGTTACATAGTAGTTAGGTACAGTGGAAGTCTCGTTAATCCATTCATCC 53298 Query 400 GCGTC 404 ||||| Sbjct 53297 GCGTC 53293 >seq1970 Length=217548 Score = 120 bits (132), Expect = 1e-24 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 ||||||||| ||| || |||| | ||||||||||| |||||||||||||||||| ||||| Sbjct 38769 TTCATGCGCATCAGTAGTTAGCTAACGAGGCATTTCGCTACCTTAAGAGAGTCACAGTTA 38828 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 ||| |||||||||||| || | | ||||| || | || |||||||| |||| || Sbjct 38829 CTCGCGCCGTTTACCCACGTTCACTCGAATTACTACTATTCAACATTCAGGACACTCAGC 38888 Query 513 AGAAAT 518 |||||| Sbjct 38889 AGAAAT 38894 Score = 93.3 bits (102), Expect = 1e-16 Identities = 258/387 (67%), Gaps = 24/387 (6%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||| ||| ||| | | |||| || ||| |||| | ||||||||||| | ||| | Sbjct 38264 CTTTCGCTTTACGAGTGGTTTCCGTCCTCTCTGAGGACAG-TTAGGACACCTTC-TTACG 38321 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT---GTCATCAACCCGG 123 |||||||||||| ||||||||| |||||||||| | |||| || ||||| || | Sbjct 38322 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCGCATGACGATAGTGTCATTAATGAG- 38380 Query 124 ATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 || | | | || | ||||| | | || || | | | ||| Sbjct 38381 ATATGTTT-------AACACAAAGATGGAAAACAGCCAA--AATACAATTCTCTTCTCAC 38431 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCA 242 | |||||||| || |||| | || | | ||||||| | | | ||||| | |||| Sbjct 38432 CGGATAAGTAAAGAATCGATGAAAGTGGCGATATTTCATTGGAGGCCGAA--GTCTCCTT 38489 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||| || ||||||||| | | || | || ||| | ||||||||| ||||||| || Sbjct 38490 GCTATGCTTCACCTCTCATGACTCTTAAGAATGTCAAAGTAGAGTCAAAGTCAACAGCGT 38549 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||| | |||| || | | | ||||| || ||||||||||||| |||| Sbjct 38550 CTTCTTTTCTCGCTCTTTTTTTCCAC-----TTCCTTGACTATGGTTTCGCTAGACAGTA 38604 Query 363 GATAGGGACAGTGGGAATCTCGTTAAT 389 | |||||||||| |||||||||| Sbjct 38605 GTTAGGGACAGT-ACTTTCTCGTTAAT 38630 >seq2715 Length=180308 Score = 105 bits (116), Expect = 2e-20 Identities = 105/134 (78%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 |||| ||| |||||| ||| ||||| | |||||| || |||||| || | || | | Sbjct 2550 ACAATGTCAAACTAGAATCAGGCTCAGCGTGGTCTTTTT--CCCGCTACTTTC-CCGATC 2606 Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389 ||||| || ||||| ||||||| ||||||||| ||| ||||||| |||||||| ||| Sbjct 2607 CCGTTTCCGCTGCTGTAGTTTCGCGAGATAGTAGTTAGAAACAGTGGAAATCTCGTCAAT 2666 Query 390 CCATTCATGCGCGT 403 ||||||||||||| Sbjct 2667 ACATTCATGCGCGT 2680 >seq6420 Length=129011 Score = 102 bits (112), Expect = 3e-19 Identities = 93/115 (81%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 |||||||| || |||| | || ||||||||||| | || ||||| | ||||||| || Sbjct 24912 TAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGACCGAA--GTCTCCCACCTA 24855 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 | |||||||||||| | | ||||||| ||| |||||||||||||||||||||| Sbjct 24854 TGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 24800 >seq11573 Length=74926 Score = 82.4 bits (90), Expect = 2e-13 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC-GCGCTTGGTTGAATTTCTTCACTTT 493 |||||||||||||||||||||||||||| ||||| | | || | ||||| || | ||| Sbjct 69388 TTAAGAGAGTCATAGTTACTCCCGCCGTATACCCTGGGATTACTCGAATTACTGCGATTT 69447 Query 494 GACATTCAGAGCACTGGGCA 513 | ||||||||||||||||| Sbjct 69448 AAGATTCAGAGCACTGGGCA 69467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635005999872