Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20]
11,864 sequences; 244,075,060 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1569 205 3e-50
seq10703 174 5e-41
seq1938 150 6e-34
seq1970 120 1e-24
seq2715 105 2e-20
seq6420 102 3e-19
seq11573 82.4 2e-13
>seq1569
Length=5773
Score = 205 bits (226), Expect = 3e-50
Identities = 154/181 (85%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383
|||||| ||||||| |||||||| ||||||||||||| | |||||||||||| ||||||
Sbjct 2949 CCAAGCTCGTTCCCATGGCTGTGATTTCGCTAGATAGCAATTAGGGACAGTGGAAATCTC 2890
Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443
||||||||||||| |||| ||| || |||| |||||||||||||| ||||||||| ||||
Sbjct 2889 GTTAATCCATTCAAGCGCATCAATAGTTAGCTGACGAGGCATTTGACTACCTTAAAAGAG 2830
Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503
||||||||| || |||||||||| ||||||| | | || || | ||| |||||||||
Sbjct 2829 TCATAGTTATTCTCGCCGTTTACTCGCGCTTACTCTACTTACTACGATTTAACATTCAGA 2770
Query 504 G 504
|
Sbjct 2769 G 2769
>seq10703
Length=106990
Score = 174 bits (192), Expect = 5e-41
Identities = 291/412 (71%), Gaps = 34/412 (8%)
Strand=Plus/Minus
Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65
||||||||||||| ||| |||| || ||| | || |||||||||||||||||||
Sbjct 41589 TCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTAAGCTAGCCTTAGGACACCTGCGTTAC 41530
Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT-------GACAATGTCAT--C 116
| ||| |||||||| |||| |||| |||||||| | || || | | || |
Sbjct 41529 GATTTGACAGATGTACCGCTCCAGTCAAACTCCACGCCGTCTCGGCGAGAGTAGCAATGC 41470
Query 117 AACCCGGATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCC 176
||| || | | || | ||| || | | |||| | | ||| || | ||
Sbjct 41469 CACCAGG-TGGCTTTGCATAAGAC---AAAGAAAAAAAAAGCT----GAAACTCAAT-CC 41419
Query 177 GCTTCATTG--ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-CGAAA 233
|||| | | |||||||| || |||| | || ||||| ||||| | ||| ||||
Sbjct 41418 TCTTCTTACCAAATAAGTAAAGAATCGATGAAAGTGGTGGT-TTTCATTGGCGATCGAA- 41361
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293
| ||| ||| || |||||||| ||| | | ||||||| ||| |||||||||| |||
Sbjct 41360 -GTCTCTCACCCATGCTACACCTTTCATGACTGTTCACAATGTCAAACTAGAGTCAGGCT 41302
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
|||| |||| | ||| || || |||| |||||||| ||||||||||||
Sbjct 41301 CAACCGGGTTATTTTTT--------TTTCG--AAGCTTATTCCCTTGACTGTGGTTTCGC 41252
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405
|||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 41251 TAGATAGTAGTTAGAGACAGTGGGAATCTCGTTAATCCACTCATGCGCGTCA 41200
>seq1938
Length=219830
Score = 150 bits (166), Expect = 6e-34
Identities = 109/125 (87%), Gaps = 1/125 (1%)
Strand=Plus/Minus
Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339
||||||||||||||||||||||||| ||| ||||||| || ||||||||||| ||||
Sbjct 53416 ACTAGAGTCAAGCTCAACAGGGTCTACTT-CCCCGCTATTTTTTCCAAGCCCGTTGCCTT 53358
Query 340 GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399
|||||||||| || || ||||||| |||| ||||||| | |||||||||||||||||| |
Sbjct 53357 GGCTGTGGTTCCGTTACATAGTAGTTAGGTACAGTGGAAGTCTCGTTAATCCATTCATCC 53298
Query 400 GCGTC 404
|||||
Sbjct 53297 GCGTC 53293
>seq1970
Length=217548
Score = 120 bits (132), Expect = 1e-24
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452
||||||||| ||| || |||| | ||||||||||| |||||||||||||||||| |||||
Sbjct 38769 TTCATGCGCATCAGTAGTTAGCTAACGAGGCATTTCGCTACCTTAAGAGAGTCACAGTTA 38828
Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512
||| |||||||||||| || | | ||||| || | || |||||||| |||| ||
Sbjct 38829 CTCGCGCCGTTTACCCACGTTCACTCGAATTACTACTATTCAACATTCAGGACACTCAGC 38888
Query 513 AGAAAT 518
||||||
Sbjct 38889 AGAAAT 38894
Score = 93.3 bits (102), Expect = 1e-16
Identities = 258/387 (67%), Gaps = 24/387 (6%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||| ||| ||| | | |||| || ||| |||| | ||||||||||| | ||| |
Sbjct 38264 CTTTCGCTTTACGAGTGGTTTCCGTCCTCTCTGAGGACAG-TTAGGACACCTTC-TTACG 38321
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT---GTCATCAACCCGG 123
|||||||||||| ||||||||| |||||||||| | |||| || ||||| || |
Sbjct 38322 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCGCATGACGATAGTGTCATTAATGAG- 38380
Query 124 ATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183
|| | | | || | ||||| | | || || | | | |||
Sbjct 38381 ATATGTTT-------AACACAAAGATGGAAAACAGCCAA--AATACAATTCTCTTCTCAC 38431
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCA 242
| |||||||| || |||| | || | | ||||||| | | | ||||| | ||||
Sbjct 38432 CGGATAAGTAAAGAATCGATGAAAGTGGCGATATTTCATTGGAGGCCGAA--GTCTCCTT 38489
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||| || ||||||||| | | || | || ||| | ||||||||| ||||||| ||
Sbjct 38490 GCTATGCTTCACCTCTCATGACTCTTAAGAATGTCAAAGTAGAGTCAAAGTCAACAGCGT 38549
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
||||||| | |||| || | | | ||||| || ||||||||||||| ||||
Sbjct 38550 CTTCTTTTCTCGCTCTTTTTTTCCAC-----TTCCTTGACTATGGTTTCGCTAGACAGTA 38604
Query 363 GATAGGGACAGTGGGAATCTCGTTAAT 389
| |||||||||| ||||||||||
Sbjct 38605 GTTAGGGACAGT-ACTTTCTCGTTAAT 38630
>seq2715
Length=180308
Score = 105 bits (116), Expect = 2e-20
Identities = 105/134 (78%), Gaps = 3/134 (2%)
Strand=Plus/Plus
Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329
|||| ||| |||||| ||| ||||| | |||||| || |||||| || | || | |
Sbjct 2550 ACAATGTCAAACTAGAATCAGGCTCAGCGTGGTCTTTTT--CCCGCTACTTTC-CCGATC 2606
Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389
||||| || ||||| ||||||| ||||||||| ||| ||||||| |||||||| |||
Sbjct 2607 CCGTTTCCGCTGCTGTAGTTTCGCGAGATAGTAGTTAGAAACAGTGGAAATCTCGTCAAT 2666
Query 390 CCATTCATGCGCGT 403
|||||||||||||
Sbjct 2667 ACATTCATGCGCGT 2680
>seq6420
Length=129011
Score = 102 bits (112), Expect = 3e-19
Identities = 93/115 (81%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246
|||||||| || |||| | || ||||||||||| | || ||||| | ||||||| ||
Sbjct 24912 TAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGACGACCGAA--GTCTCCCACCTA 24855
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
| |||||||||||| | | ||||||| ||| ||||||||||||||||||||||
Sbjct 24854 TGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 24800
>seq11573
Length=74926
Score = 82.4 bits (90), Expect = 2e-13
Identities = 67/80 (84%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC-GCGCTTGGTTGAATTTCTTCACTTT 493
|||||||||||||||||||||||||||| ||||| | | || | ||||| || | |||
Sbjct 69388 TTAAGAGAGTCATAGTTACTCCCGCCGTATACCCTGGGATTACTCGAATTACTGCGATTT 69447
Query 494 GACATTCAGAGCACTGGGCA 513
| |||||||||||||||||
Sbjct 69448 AAGATTCAGAGCACTGGGCA 69467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635005999872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |