Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq653 132 1e-28 seq6419 102 2e-19 seq2804 91.5 4e-16 seq500 82.4 2e-13 seq11374 78.8 3e-12 >seq653 Length=289248 Score = 132 bits (146), Expect = 1e-28 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 || ||| ||| || ||||||||||||||||||| ||||||||||| ||||| | ||||| Sbjct 225076 GAGTGGATAAGTTACGCGCCTGCTGCCTTCCTTCCATGTGGTAGCCATTTCTAAAGCTCC 225017 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 ||||||||| ||||||||| ||| |||||||| | |||||||||| | | || | Sbjct 225016 CTCTCCGGAGTCGAACCCTTATTTTTCGTTACCCATAATAACCATGGTAGACTAATAGAC 224957 Query 192 TACCATCGAAAGTTGATAGGGCAGA 216 ||| ||| | |||||||||||||| Sbjct 224956 TACTATC--AGGTTGATAGGGCAGA 224934 >seq6419 Length=556175 Score = 102 bits (112), Expect = 2e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146 |||||||||||| |||||||||||||||||||||| | | ||||| |||||||| || || Sbjct 158213 GCGCCTGCTGCCCTCCTTGGATGTGGTAGCCGTTTTTAAAGCTCCTTCTCCGGAGTCAAA 158154 Query 147 CCCTAATTCCCCGTTACCCGT 167 |||| |||| |||| |||||| Sbjct 158153 CCCTTATTCTCCGTAACCCGT 158133 >seq2804 Length=184900 Score = 91.5 bits (100), Expect = 4e-16 Identities = 127/175 (73%), Gaps = 16/175 (9%) Strand=Plus/Plus Query 307 TCTAATAAATACACCCCTTCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTA 365 |||||||| | ||||| ||| |||| ||||| || ||||||||||| |||| |||| Sbjct 53274 TCTAATAATTGCACCCTTTCGAAAGTTATGGTTTATTCGCATGTATTAGTTCTACAATTG 53333 Query 366 CCACGGTTATCCATGTAGTAAGGTACTAT-CAAATAAACGATAACTGATTTAATGAGCCA 424 || | |||||||| || | ||| | ||||||| | | ||| | ||||||||| Sbjct 53334 CCGCAGTTATCCA------AAAGGACTTTCCAAATAAGTGTCATCTGCTCTAATGAGCCG 53387 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||| || | ||||| | | ||||||||| ||||||||||| Sbjct 53388 TTCGCAGTTT--CTCTTTAGAT------GAACTCGACATGCATAGCTTAATCTTT 53434 >seq500 Length=30757 Score = 82.4 bits (90), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 11/182 (6%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGG-GATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 ||||| | ||||||| || | ||| | || ||| ||| || |||| ||||||| || Sbjct 12241 TATTTCTAGTCACTAACTTATC-TGTTGAAGAGTGGATAAATTACGCGTCTGCTGCTTTG 12299 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC-----CCTAATTCC 156 |||||||||||| | ||||||| ||| ||||| | ||| ||||| ||| |||| Sbjct 12300 CTTGGATGTGGTGGTCGTTTCTGAGGGTCCCTTCCTGGAGCCGAACCTTTTCCTTATTCT 12359 Query 157 CCGTTACC--CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCA 214 ||| | || | | |||||||||| | | || || || || | |||||||||||| Sbjct 12360 CCGCTCCCATAATAGTGACCATGGTAGACTAATAGACTTCCGTC--AGGTTGATAGGGCA 12417 Query 215 GA 216 || Sbjct 12418 GA 12419 >seq11374 Length=105828 Score = 78.8 bits (86), Expect = 3e-12 Identities = 86/114 (75%), Gaps = 14/114 (12%) Strand=Plus/Minus Query 104 TGGATGTGGT-AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||||| | |||||||||| |||||||||||||||| ||||||||| |||| || ||| Sbjct 37854 TGCATGTGATTAGCCGTTTCTGAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCATTA 37795 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||||| ||| || || ||||| | |||||||| ||||| Sbjct 37794 -----------CATGGTAGACCAATAGACTTCCATC--AGGTTGATAGCGCAGA 37754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510220806144