Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20]
11,864 sequences; 244,075,060 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq653 132 1e-28
seq6419 102 2e-19
seq2804 91.5 4e-16
seq500 82.4 2e-13
seq11374 78.8 3e-12
>seq653
Length=289248
Score = 132 bits (146), Expect = 1e-28
Identities = 117/145 (81%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
|| ||| ||| || ||||||||||||||||||| ||||||||||| ||||| | |||||
Sbjct 225076 GAGTGGATAAGTTACGCGCCTGCTGCCTTCCTTCCATGTGGTAGCCATTTCTAAAGCTCC 225017
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191
||||||||| ||||||||| ||| |||||||| | |||||||||| | | || |
Sbjct 225016 CTCTCCGGAGTCGAACCCTTATTTTTCGTTACCCATAATAACCATGGTAGACTAATAGAC 224957
Query 192 TACCATCGAAAGTTGATAGGGCAGA 216
||| ||| | ||||||||||||||
Sbjct 224956 TACTATC--AGGTTGATAGGGCAGA 224934
>seq6419
Length=556175
Score = 102 bits (112), Expect = 2e-19
Identities = 71/81 (88%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146
|||||||||||| |||||||||||||||||||||| | | ||||| |||||||| || ||
Sbjct 158213 GCGCCTGCTGCCCTCCTTGGATGTGGTAGCCGTTTTTAAAGCTCCTTCTCCGGAGTCAAA 158154
Query 147 CCCTAATTCCCCGTTACCCGT 167
|||| |||| |||| ||||||
Sbjct 158153 CCCTTATTCTCCGTAACCCGT 158133
>seq2804
Length=184900
Score = 91.5 bits (100), Expect = 4e-16
Identities = 127/175 (73%), Gaps = 16/175 (9%)
Strand=Plus/Plus
Query 307 TCTAATAAATACACCCCTTCCGAAGTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTA 365
|||||||| | ||||| ||| |||| ||||| || ||||||||||| |||| ||||
Sbjct 53274 TCTAATAATTGCACCCTTTCGAAAGTTATGGTTTATTCGCATGTATTAGTTCTACAATTG 53333
Query 366 CCACGGTTATCCATGTAGTAAGGTACTAT-CAAATAAACGATAACTGATTTAATGAGCCA 424
|| | |||||||| || | ||| | ||||||| | | ||| | |||||||||
Sbjct 53334 CCGCAGTTATCCA------AAAGGACTTTCCAAATAAGTGTCATCTGCTCTAATGAGCCG 53387
Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479
|||||||||| || | ||||| | | ||||||||| |||||||||||
Sbjct 53388 TTCGCAGTTT--CTCTTTAGAT------GAACTCGACATGCATAGCTTAATCTTT 53434
>seq500
Length=30757
Score = 82.4 bits (90), Expect = 2e-13
Identities = 130/182 (71%), Gaps = 11/182 (6%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGG-GATTGGGTAATTTGCGCGCCTGCTGCCTTC 101
||||| | ||||||| || | ||| | || ||| ||| || |||| ||||||| ||
Sbjct 12241 TATTTCTAGTCACTAACTTATC-TGTTGAAGAGTGGATAAATTACGCGTCTGCTGCTTTG 12299
Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC-----CCTAATTCC 156
|||||||||||| | ||||||| ||| ||||| | ||| ||||| ||| ||||
Sbjct 12300 CTTGGATGTGGTGGTCGTTTCTGAGGGTCCCTTCCTGGAGCCGAACCTTTTCCTTATTCT 12359
Query 157 CCGTTACC--CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCA 214
||| | || | | |||||||||| | | || || || || | ||||||||||||
Sbjct 12360 CCGCTCCCATAATAGTGACCATGGTAGACTAATAGACTTCCGTC--AGGTTGATAGGGCA 12417
Query 215 GA 216
||
Sbjct 12418 GA 12419
>seq11374
Length=105828
Score = 78.8 bits (86), Expect = 3e-12
Identities = 86/114 (75%), Gaps = 14/114 (12%)
Strand=Plus/Minus
Query 104 TGGATGTGGT-AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|| ||||| | |||||||||| |||||||||||||||| ||||||||| |||| || |||
Sbjct 37854 TGCATGTGATTAGCCGTTTCTGAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCATTA 37795
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
|||||||| ||| || || ||||| | |||||||| |||||
Sbjct 37794 -----------CATGGTAGACCAATAGACTTCCATC--AGGTTGATAGCGCAGA 37754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510220806144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |