Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014
-09-26] 29,375 sequences; 294,400,206 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq577 154 6e-35
seq1450 136 2e-29
seq5896 89.7 2e-15
seq3319 87.8 7e-15
>seq577
Length=80828
Score = 154 bits (170), Expect = 6e-35
Identities = 217/303 (72%), Gaps = 25/303 (8%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464
|| ||||||||| |||||||||| |||||| |||| | || |||||| ||||| ||
Sbjct 79121 CGACCCGTCTTGAAACACGGACCGAGGAGTGTAACTTGTACGCGAGTCAAAGGGTGGAAA 79062
Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGT--------------GGGAACC----CGTG 506
|||| ||| ||||||||| || | ||| |||| || |||
Sbjct 79061 ACCCCAAGGCGCAATGAAAGTAAAGGTCGGTTAACCGACTGACATGGGATCCGTTTCGTT 79002
Query 507 ----AG-GGTGCACCATCGACCGATCCTGATGTCTT-CGGATGGATTTGAGTAAGAGCAT 560
|| || ||||||| | || || || ||| | ||||| ||| |||| |
Sbjct 79001 TTGAAGCGGCGCACCATGGCCCTGTCTTGTCTGCTTGCAGATGGGCAGCGGTA-GAGCGT 78943
Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620
| |||| |||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 78942 ACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAACT 78883
Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
|||||||| | || | |||||||| ||||||||||||||| | | |||||||||||||
Sbjct 78882 CTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGG 78823
Query 681 CGA 683
|||
Sbjct 78822 CGA 78820
>seq1450
Length=43984
Score = 136 bits (150), Expect = 2e-29
Identities = 108/130 (83%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||| |||| ||||||||||||||||||||||| ||| |||| ||||
Sbjct 19263 AGAGCGTACAGGTTGCGACCTGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGA 19322
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||| | || | |||||||| ||||||||||||| | | | ||||||
Sbjct 19323 GGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATTGATAGACTTGGGT 19382
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 19383 ATAGGGGCGA 19392
>seq5896
Length=11920
Score = 89.7 bits (98), Expect = 2e-15
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA-ATAGGGTGAAGCCAG 612
||||| || ||||| ||||||||||||||||||||||||||| | ||| |||| |||
Sbjct 8815 AGAGCGTACATGTTGCTACCCGAAAGATGGTGAACTATGCCTGATACAGGACGAAGTCAG 8756
Query 613 AGGAAACTCTGGTGGA 628
||||||||||||||||
Sbjct 8755 AGGAAACTCTGGTGGA 8740
>seq3319
Length=21605
Score = 87.8 bits (96), Expect = 7e-15
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
|||| ||| ||||||||||||||||||||||||| ||| ||||| |||||||| ||||||
Sbjct 1013 GTTGCGACTCGAAAGATGGTGAACTATGCCTGAACAGGATGAAGTCAGAGGAATCTCTGG 1072
Query 625 TGG 627
|||
Sbjct 1073 TGG 1075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079369906250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |