Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq577 154 6e-35 seq1450 136 2e-29 seq5896 89.7 2e-15 seq3319 87.8 7e-15 >seq577 Length=80828 Score = 154 bits (170), Expect = 6e-35 Identities = 217/303 (72%), Gaps = 25/303 (8%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||| |||||| |||| | || |||||| ||||| || Sbjct 79121 CGACCCGTCTTGAAACACGGACCGAGGAGTGTAACTTGTACGCGAGTCAAAGGGTGGAAA 79062 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGT--------------GGGAACC----CGTG 506 |||| ||| ||||||||| || | ||| |||| || ||| Sbjct 79061 ACCCCAAGGCGCAATGAAAGTAAAGGTCGGTTAACCGACTGACATGGGATCCGTTTCGTT 79002 Query 507 ----AG-GGTGCACCATCGACCGATCCTGATGTCTT-CGGATGGATTTGAGTAAGAGCAT 560 || || ||||||| | || || || ||| | ||||| ||| |||| | Sbjct 79001 TTGAAGCGGCGCACCATGGCCCTGTCTTGTCTGCTTGCAGATGGGCAGCGGTA-GAGCGT 78943 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 | |||| |||||||||||||||||||||||||||| ||| |||| ||||||||||| Sbjct 78942 ACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAACT 78883 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||||| | || | |||||||| ||||||||||||||| | | ||||||||||||| Sbjct 78882 CTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGG 78823 Query 681 CGA 683 ||| Sbjct 78822 CGA 78820 >seq1450 Length=43984 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||| ||||||||||||||||||||||| ||| |||| |||| Sbjct 19263 AGAGCGTACAGGTTGCGACCTGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGA 19322 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | |||||||| ||||||||||||| | | | |||||| Sbjct 19323 GGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATTGATAGACTTGGGT 19382 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 19383 ATAGGGGCGA 19392 >seq5896 Length=11920 Score = 89.7 bits (98), Expect = 2e-15 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGA-ATAGGGTGAAGCCAG 612 ||||| || ||||| ||||||||||||||||||||||||||| | ||| |||| ||| Sbjct 8815 AGAGCGTACATGTTGCTACCCGAAAGATGGTGAACTATGCCTGATACAGGACGAAGTCAG 8756 Query 613 AGGAAACTCTGGTGGA 628 |||||||||||||||| Sbjct 8755 AGGAAACTCTGGTGGA 8740 >seq3319 Length=21605 Score = 87.8 bits (96), Expect = 7e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||| ||||||||||||||||||||||||| ||| ||||| |||||||| |||||| Sbjct 1013 GTTGCGACTCGAAAGATGGTGAACTATGCCTGAACAGGATGAAGTCAGAGGAATCTCTGG 1072 Query 625 TGG 627 ||| Sbjct 1073 TGG 1075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079369906250