Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq30 82.4 1e-13 seq1515 73.4 6e-11 >seq30 Length=227172 Score = 82.4 bits (90), Expect = 1e-13 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 ||||||| ||||| |||||||||||| |||| | ||||| |||| ||||||| |||| Sbjct 190974 TCGTTATTGGAATAAACCAGACAAATTGCTCCTCTAACTACGAACCATCATGCACTACCA 190915 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||| || ||||||| |||||||||| Sbjct 190914 ACCACCATATCGAGGAAGAGCTTTCAATCTGTC 190882 >seq1515 Length=42711 Score = 73.4 bits (80), Expect = 6e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 ||| ||||||||| || ||||||||||||| ||| ||||| |||||||||| ||| ||| Sbjct 1986 CCATCAACTAAGAGCGACCATGCACCACCAACCACCGAATCGAGAAAGAGCTTTCAGTCT 2045 Query 256 GTC 258 ||| Sbjct 2046 GTC 2048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796573254375