Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014
-09-26] 29,375 sequences; 294,400,206 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq38 349 6e-94
seq173 196 8e-48
seq4503 185 1e-44
seq9 143 5e-32
seq1606 105 1e-20
seq119 102 1e-19
seq20463 77.0 6e-12
seq149 77.0 6e-12
>seq38
Length=214929
Score = 349 bits (386), Expect = 6e-94
Identities = 239/266 (90%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 182636 GTCAATAGCAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 182695
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 182696 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 182755
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 182756 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 182815
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACT-AAAGGATCGAT 267
|||||||||||||||||| ||||||| || ||| || ||| | |||||||||||
Sbjct 182816 CCTGTGGTAACTTTTCTGACACCTCTTACCAGAAACCATC--TGGATTAAAAGGATCGAT 182873
Query 268 AGGCCACACTTTCATGGTTTGTATTC 293
||||||| ||||| ||| |||| ||
Sbjct 182874 AGGCCACGCTTTCGCGGTCTGTACTC 182899
>seq173
Length=136363
Score = 196 bits (216), Expect = 8e-48
Identities = 199/253 (79%), Gaps = 6/253 (2%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| |||||||||| |||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 114239 GTCAACAGTAGGGTACAACTAACCTGCCTCACGACGGTCTAAACCCGGCTCACGTTCCCT 114298
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||||||||||||||||| ||| |||||||| ||| |||||| ||||| |
Sbjct 114299 ATTAGTGGGTGAACAATCCATTGCTCGGGTAATTCTGCATCGCAATGATA-GAAGACTCC 114357
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|| ||||||| ||||| || ||| || || || ||||||||||||||||||| | |
Sbjct 114358 ACGCAAAAGGATC-AAAAGTAAGGTCCCTGTGGACATTTGGCTGCCACAAGCCAGTGAAC 114416
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACT-AAAGGATCGAT 267
| ||| || |||||||| ||| ||| || ||| || ||| | |||| ||||||
Sbjct 114417 CTAGTGATAGCTTTTCTGACACGTCTCACCAGAAAGCATC--TGGATTGAAAGAATCGAT 114474
Query 268 AGGCCACACTTTC 280
||||||| ||||
Sbjct 114475 AGGCCACGATTTC 114487
>seq4503
Length=15987
Score = 185 bits (204), Expect = 1e-44
Identities = 130/147 (88%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | ||||| || | | | |||| |||||||||||||||||||||||||
Sbjct 14360 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 14301
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 14300 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 14241
Query 120 AATTCTGCTTCGGTATGATAGGAAGAG 146
|||||||||||| |||||||||||||
Sbjct 14240 AATTCTGCTTCGCAATGATAGGAAGAG 14214
>seq9
Length=307682
Score = 143 bits (158), Expect = 5e-32
Identities = 145/187 (78%), Gaps = 5/187 (3%)
Strand=Plus/Minus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 126736 CCTGTCTCACCACGGTCTAAACTCAGCTCACGTTCCCTATTAGTGAATGAACAATCCAAT 126677
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
| ||||||||||| | || |||||||||||||| |||| ||| ||||||||
Sbjct 126676 CAT--GGGAATTCTGCTTTGCAATCATAGGAAGAGCCGAAATCGTAGGTCTAAAAAGCAG 126619
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA---CTTTTCTGG 228
|||| |||| || | || || || | |||| ||||| |||||| |||| |||
Sbjct 126618 CGTCACTATTGACTACTATCTACCGCAGGTTAGTTGTCCCTTTGGTAACTTCTTTCCTGA 126559
Query 229 CACCTCT 235
|||||||
Sbjct 126558 CACCTCT 126552
>seq1606
Length=40811
Score = 105 bits (116), Expect = 1e-20
Identities = 102/128 (80%), Gaps = 6/128 (5%)
Strand=Plus/Minus
Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214
||| | ||||||||||||||||||| | | |||| | |||||||||||||| ||||||||
Sbjct 40168 GAATGTTCAAAAAGCAACGTCGCTACGGAAGCTTAGTTGCCACAAGCCAGTCATCCCTGT 40109
Query 215 GGTAACTTTTCTGGCACCT-CTAGCCTCA--AATTTCGAGGGACTAAAGGATCGATAGGC 271
||||||||||||| ||||| ||| ||| || | | || |||| ||||||||
Sbjct 40108 GGTAACTTTTCTGACACCTCCTA---TCAGTAACTACTTGGATTAAAAGTGCCGATAGGC 40052
Query 272 CACACTTT 279
||||||||
Sbjct 40051 CACACTTT 40044
>seq119
Length=154121
Score = 102 bits (112), Expect = 1e-19
Identities = 113/147 (77%), Gaps = 8/147 (5%)
Strand=Plus/Minus
Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194
|| |||||||||||||| | |||||| |||||||||| | ||| || |||||||||
Sbjct 29650 TGGTAGGAAGAGCCGACGTTGAAGGAGCAAAAAGCAATTT----ATGGACACTTGGCTGC 29595
Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC-TCTAGCCTCAAATTTCGAGGG 253
| ||||||| ||||| ||||||||||||||| |||| | || | || || ||
Sbjct 29594 CGCAAGCCAACTATCCACGTGGTAACTTTTCTGACACCTTTTATCAGGAACCATC--TGG 29537
Query 254 ACT-AAAGGATCGATAGGCCACACTTT 279
| | ||||||| |||||||||| ||||
Sbjct 29536 ATTGAAAGGATGGATAGGCCACGCTTT 29510
>seq20463
Length=1396
Score = 77.0 bits (84), Expect = 6e-12
Identities = 74/95 (78%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA 254
|||||| |||||||||||||||||||||||||| |||||| || ||| | ||
Sbjct 95 CACAAGACAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTACCAGAAACCATGTGGAT 154
Query 255 CTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289
||||||||||| |||||| || ||| ||| |||
Sbjct 155 TAAAAGGATCGATGGGCCACGCTCTCACGGTCTGT 189
>seq149
Length=142489
Score = 77.0 bits (84), Expect = 6e-12
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCA 76
|||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 54563 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCA 54609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854149020000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |