Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq38 349 6e-94 seq173 196 8e-48 seq4503 185 1e-44 seq9 143 5e-32 seq1606 105 1e-20 seq119 102 1e-19 seq20463 77.0 6e-12 seq149 77.0 6e-12 >seq38 Length=214929 Score = 349 bits (386), Expect = 6e-94 Identities = 239/266 (90%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 182636 GTCAATAGCAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 182695 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 182696 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 182755 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 182756 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 182815 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACT-AAAGGATCGAT 267 |||||||||||||||||| ||||||| || ||| || ||| | ||||||||||| Sbjct 182816 CCTGTGGTAACTTTTCTGACACCTCTTACCAGAAACCATC--TGGATTAAAAGGATCGAT 182873 Query 268 AGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||||| ||| |||| || Sbjct 182874 AGGCCACGCTTTCGCGGTCTGTACTC 182899 >seq173 Length=136363 Score = 196 bits (216), Expect = 8e-48 Identities = 199/253 (79%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||| |||||||||| |||| |||||||||||||| ||||||||||||| Sbjct 114239 GTCAACAGTAGGGTACAACTAACCTGCCTCACGACGGTCTAAACCCGGCTCACGTTCCCT 114298 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||| ||| |||||||| ||| |||||| ||||| | Sbjct 114299 ATTAGTGGGTGAACAATCCATTGCTCGGGTAATTCTGCATCGCAATGATA-GAAGACTCC 114357 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 || ||||||| ||||| || ||| || || || ||||||||||||||||||| | | Sbjct 114358 ACGCAAAAGGATC-AAAAGTAAGGTCCCTGTGGACATTTGGCTGCCACAAGCCAGTGAAC 114416 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACT-AAAGGATCGAT 267 | ||| || |||||||| ||| ||| || ||| || ||| | |||| |||||| Sbjct 114417 CTAGTGATAGCTTTTCTGACACGTCTCACCAGAAAGCATC--TGGATTGAAAGAATCGAT 114474 Query 268 AGGCCACACTTTC 280 ||||||| |||| Sbjct 114475 AGGCCACGATTTC 114487 >seq4503 Length=15987 Score = 185 bits (204), Expect = 1e-44 Identities = 130/147 (88%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 14360 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 14301 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 14300 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 14241 Query 120 AATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||| ||||||||||||| Sbjct 14240 AATTCTGCTTCGCAATGATAGGAAGAG 14214 >seq9 Length=307682 Score = 143 bits (158), Expect = 5e-32 Identities = 145/187 (78%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 126736 CCTGTCTCACCACGGTCTAAACTCAGCTCACGTTCCCTATTAGTGAATGAACAATCCAAT 126677 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 | ||||||||||| | || |||||||||||||| |||| ||| |||||||| Sbjct 126676 CAT--GGGAATTCTGCTTTGCAATCATAGGAAGAGCCGAAATCGTAGGTCTAAAAAGCAG 126619 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA---CTTTTCTGG 228 |||| |||| || | || || || | |||| ||||| |||||| |||| ||| Sbjct 126618 CGTCACTATTGACTACTATCTACCGCAGGTTAGTTGTCCCTTTGGTAACTTCTTTCCTGA 126559 Query 229 CACCTCT 235 ||||||| Sbjct 126558 CACCTCT 126552 >seq1606 Length=40811 Score = 105 bits (116), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 6/128 (5%) Strand=Plus/Minus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||| | ||||||||||||||||||| | | |||| | |||||||||||||| |||||||| Sbjct 40168 GAATGTTCAAAAAGCAACGTCGCTACGGAAGCTTAGTTGCCACAAGCCAGTCATCCCTGT 40109 Query 215 GGTAACTTTTCTGGCACCT-CTAGCCTCA--AATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||| ||||| ||| ||| || | | || |||| |||||||| Sbjct 40108 GGTAACTTTTCTGACACCTCCTA---TCAGTAACTACTTGGATTAAAAGTGCCGATAGGC 40052 Query 272 CACACTTT 279 |||||||| Sbjct 40051 CACACTTT 40044 >seq119 Length=154121 Score = 102 bits (112), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 || |||||||||||||| | |||||| |||||||||| | ||| || ||||||||| Sbjct 29650 TGGTAGGAAGAGCCGACGTTGAAGGAGCAAAAAGCAATTT----ATGGACACTTGGCTGC 29595 Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC-TCTAGCCTCAAATTTCGAGGG 253 | ||||||| ||||| ||||||||||||||| |||| | || | || || || Sbjct 29594 CGCAAGCCAACTATCCACGTGGTAACTTTTCTGACACCTTTTATCAGGAACCATC--TGG 29537 Query 254 ACT-AAAGGATCGATAGGCCACACTTT 279 | | ||||||| |||||||||| |||| Sbjct 29536 ATTGAAAGGATGGATAGGCCACGCTTT 29510 >seq20463 Length=1396 Score = 77.0 bits (84), Expect = 6e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 195 CACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA 254 |||||| |||||||||||||||||||||||||| |||||| || ||| | || Sbjct 95 CACAAGACAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTACCAGAAACCATGTGGAT 154 Query 255 CTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||||||||| |||||| || ||| ||| ||| Sbjct 155 TAAAAGGATCGATGGGCCACGCTCTCACGGTCTGT 189 >seq149 Length=142489 Score = 77.0 bits (84), Expect = 6e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCA 76 |||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 54563 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCA 54609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854149020000