Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014
-09-26] 29,375 sequences; 294,400,206 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq38 246 1e-62
seq8689 178 4e-42
seq782 125 2e-26
seq9190 113 1e-22
seq119 78.8 3e-12
>seq38
Length=214929
Score = 246 bits (272), Expect = 1e-62
Identities = 303/408 (74%), Gaps = 31/408 (8%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| |||| || ||| |||| |||||||||||||||||||
Sbjct 182933 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 182992
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||||||| ||||||||| |||||||| |||| | || | | |||
Sbjct 182993 GTTTGACAGATGTACCGCCCCAGTCAAACTCC-----TGACGCTTTCTTTGGC---GATA 183044
Query 127 GGC-CCGCGAAG-GAC----CTTAACGCCAG--AAAATGGTCGGTGAAGACCAGTTCCGC 178
| | || | | | | | ||||| | | |||| | | || ||| || |||
Sbjct 183045 GTCGCCACCAGGTGGCTTTGCTTAATACAAAGAAAAAAGAGCCGTAAAGCTCAATTCTCT 183104
Query 179 T-TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGG 236
| ||| || |||||||| || |||| | || ||||||||||| | || ||||| |
Sbjct 183105 TCTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGTCGACCGAA--GT 183162
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||||
Sbjct 183163 CTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAA 183222
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||| || |||||||||||||||||||||||||||||| | |
Sbjct 183223 CAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGTTGG 183282
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404
| ||||||| ||||||||| ||||||||||||||||||
Sbjct 183283 A-----------GACAGTGAGAATCTCGTCAATCCATTCATGCGCGTC 183319
>seq8689
Length=7062
Score = 178 bits (196), Expect = 4e-42
Identities = 115/126 (91%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5859 CATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 5918
Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514
|||||||||||||||||||| | ||||| || | ||| ||||||||||||||||||||
Sbjct 5919 CCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAG 5978
Query 515 AAATCA 520
||||||
Sbjct 5979 AAATCA 5984
Score = 165 bits (182), Expect = 3e-38
Identities = 100/106 (94%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGT 60
Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAGTAAT 106
>seq782
Length=68411
Score = 125 bits (138), Expect = 2e-26
Identities = 96/114 (84%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466
|| || | |||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 35740 TATTTGGCTGACGAAGCATTTGGCTACCTTAAGAGAACCATAGTTACTCACGCCGTTTAC 35799
Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|||||||| | ||||| || | ||| || | ||||| |||||||||||||||
Sbjct 35800 CCGCGCTTATTCGAATTACTACGATTTAACGTCCAGAGTACTGGGCAGAAATCA 35853
>seq9190
Length=6419
Score = 113 bits (124), Expect = 1e-22
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 70 CCATTCATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 11
Query 450 TTACTCCCGC 459
||||||||||
Sbjct 10 TTACTCCCGC 1
>seq119
Length=154121
Score = 78.8 bits (86), Expect = 3e-12
Identities = 107/149 (72%), Gaps = 13/149 (9%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||| ||| ||| ||||||||||| | |||||||||| | ||||||||||| || ||
Sbjct 29022 CTCGCACCTATGCTACACCTCTCTTTGCTTTTCACAAAGCCAAACTAGAGTCAAACTTAA 28963
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||| | ||||| ||||| || | | ||| | ||||||| || ||||
Sbjct 28962 CAGGAACCTCTTT-CCCGC-GAGTTTGTCAATCGCGTTCCCCTGTCTGT----------- 28916
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGT 385
||||||| || ||| ||| |||||||||
Sbjct 28915 ATAGTAGTCAGAGACGGTGCGAATCTCGT 28887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634719660000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |