Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq38 246 1e-62 seq8689 178 4e-42 seq782 125 2e-26 seq9190 113 1e-22 seq119 78.8 3e-12 >seq38 Length=214929 Score = 246 bits (272), Expect = 1e-62 Identities = 303/408 (74%), Gaps = 31/408 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| Sbjct 182933 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACA 182992 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||| |||| | || | | ||| Sbjct 182993 GTTTGACAGATGTACCGCCCCAGTCAAACTCC-----TGACGCTTTCTTTGGC---GATA 183044 Query 127 GGC-CCGCGAAG-GAC----CTTAACGCCAG--AAAATGGTCGGTGAAGACCAGTTCCGC 178 | | || | | | | | ||||| | | |||| | | || ||| || ||| Sbjct 183045 GTCGCCACCAGGTGGCTTTGCTTAATACAAAGAAAAAAGAGCCGTAAAGCTCAATTCTCT 183104 Query 179 T-TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGG 236 | ||| || |||||||| || |||| | || ||||||||||| | || ||||| | Sbjct 183105 TCTCACCGAATAAGTAAAGAATCGATGAAAGTGGTGGTATTTCATTGTCGACCGAA--GT 183162 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||||||| | | ||||||| ||| ||||||||||||||||| Sbjct 183163 CTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAA 183222 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| || |||||||||||||||||||||||||||||| | | Sbjct 183223 CAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGTTGG 183282 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 | ||||||| ||||||||| |||||||||||||||||| Sbjct 183283 A-----------GACAGTGAGAATCTCGTCAATCCATTCATGCGCGTC 183319 >seq8689 Length=7062 Score = 178 bits (196), Expect = 4e-42 Identities = 115/126 (91%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5859 CATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 5918 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||| | ||||| || | ||| |||||||||||||||||||| Sbjct 5919 CCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAG 5978 Query 515 AAATCA 520 |||||| Sbjct 5979 AAATCA 5984 Score = 165 bits (182), Expect = 3e-38 Identities = 100/106 (94%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGT 60 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAGTAAT 106 >seq782 Length=68411 Score = 125 bits (138), Expect = 2e-26 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 || || | |||||| ||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 35740 TATTTGGCTGACGAAGCATTTGGCTACCTTAAGAGAACCATAGTTACTCACGCCGTTTAC 35799 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||| | ||||| || | ||| || | ||||| ||||||||||||||| Sbjct 35800 CCGCGCTTATTCGAATTACTACGATTTAACGTCCAGAGTACTGGGCAGAAATCA 35853 >seq9190 Length=6419 Score = 113 bits (124), Expect = 1e-22 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 70 CCATTCATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 11 Query 450 TTACTCCCGC 459 |||||||||| Sbjct 10 TTACTCCCGC 1 >seq119 Length=154121 Score = 78.8 bits (86), Expect = 3e-12 Identities = 107/149 (72%), Gaps = 13/149 (9%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| ||| ||| ||||||||||| | |||||||||| | ||||||||||| || || Sbjct 29022 CTCGCACCTATGCTACACCTCTCTTTGCTTTTCACAAAGCCAAACTAGAGTCAAACTTAA 28963 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| | ||||| ||||| || | | ||| | ||||||| || |||| Sbjct 28962 CAGGAACCTCTTT-CCCGC-GAGTTTGTCAATCGCGTTCCCCTGTCTGT----------- 28916 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGT 385 ||||||| || ||| ||| ||||||||| Sbjct 28915 ATAGTAGTCAGAGACGGTGCGAATCTCGT 28887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634719660000