Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4503 86.0 1e-14 seq269 75.2 2e-11 >seq4503 Length=15987 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || | | || | Sbjct 14358 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 14415 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 14416 GGTCCGAAGCTACCATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 14469 >seq269 Length=115214 Score = 75.2 bits (82), Expect = 2e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| |||| || | |||||| | |||||| || ||| | || ||| || | Sbjct 54999 GTACGAGAAGAACAGCA-AGTTCAGAC-ATTTGGTTCATGGATCTGACCGATCAGTCAAT 55056 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT-AAGTCAGAATCC 114 | |||||||||| ||| ||||||||| |||||||||||| ||||||| |||| Sbjct 55057 GGTCCGAAGCTACCGTCTATTGGATTATGACTGAACGCCTCTCAAGTCAGGATCC 55111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818966880000