Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014
-09-26] 29,375 sequences; 294,400,206 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq168 174 5e-41
seq122 114 4e-23
seq48 109 2e-21
seq1231 100 9e-19
seq192 98.7 3e-18
seq707 91.5 4e-16
seq1454 82.4 2e-13
>seq168
Length=137536
Score = 174 bits (192), Expect = 5e-41
Identities = 141/170 (83%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || |||||||||||||||||
Sbjct 111965 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 112024
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||
Sbjct 112025 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 112084
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212
||||| |||||||||| | | || |||||||| | ||||||||||
Sbjct 112085 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGG 112132
>seq122
Length=153226
Score = 114 bits (126), Expect = 4e-23
Identities = 131/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||| ||| | || |||||| ||| || | |||||| ||||||||
Sbjct 150115 TATTTTTAGTCACTATCTCATTAT-TCAAGATTGGATAAGTTCCTCGCCTGTTGCCTTCC 150057
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|| ||||||||||||||||| ||||| || | |||| || |||||| |||| | ||||
Sbjct 150056 ATGAATGTGGTAGCCGTTTCTAAGGCTTACTATTCGGAGTCAAACCCTTATTCTCTGTTA 149997
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
|| || ||||||||| | | | |||||||| | ||||||||| ||||
Sbjct 149996 CCGGTCACAACCATGGTAAACTAATTGACTACCATC--AGGTTGATAGGACAGA 149945
>seq48
Length=196061
Score = 109 bits (120), Expect = 2e-21
Identities = 138/186 (74%), Gaps = 14/186 (8%)
Strand=Plus/Minus
Query 308 CTAATAAATACACCCCTTCCGAAGTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTAC 366
||||||| |||||| || | ||| |||||| | |||||||||||||| ||||||||
Sbjct 173176 CTAATAATTACACCGCTACAAGCGTCAAGGTTTTATTGCATGTATTAGCTCCAGAATTAC 173117
Query 367 CACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426
| | |||||||| ||| | | | | |||||| || | ||| | ||||||||| ||
Sbjct 173116 CGCAGTTATCCA-ATAGGACG----TTCCGAATAAATGACATCTGCTCTAATGAGCCGTT 173062
Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486
|||||||| || ||||||| | || ||||||||||||||||||||| | |
Sbjct 173061 CGCAGTTT--CTCTATAGAT------GAATTCGACATGCATGGCTTAATCTTTAAACTGA 173010
Query 487 GCATAT 492
||||||
Sbjct 173009 GCATAT 173004
>seq1231
Length=49194
Score = 100 bits (110), Expect = 9e-19
Identities = 98/123 (80%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154
|||||||||||||||| ||||||||||| || | ||||||||| |||||| || | |
Sbjct 26814 TGCCTTCCTTGGATGTAATAGCCGTTTCTGAGACCAACTCTCCGGAGTCGAACTCTTACT 26873
Query 155 CCCCGTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213
||||||||| | ||| ||||||||| | | || |||||||| | |||||||||||
Sbjct 26874 ATCCGTTACCC-ATAATAGCCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGC 26930
Query 214 AGA 216
|||
Sbjct 26931 AGA 26933
>seq192
Length=131751
Score = 98.7 bits (108), Expect = 3e-18
Identities = 118/157 (75%), Gaps = 10/157 (6%)
Strand=Plus/Plus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA------ 125
|| ||| ||| | ||||||||||| || ||||||| ||||| |||||||| |
Sbjct 19085 GACTGGATAAGATTCGCGCCTGCTGTCT-CCTTGGAAGTGGTTACCGTTTCTAACTGTAA 19143
Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185
||||||||| || || | || |||| |||| ||||||||||| ||||||||| ||
Sbjct 19144 GGCTCCCTCCCCAGAGTGGAGCCCTTATTCTCCGTTACCCGTAATAACCATGGTAAGCTT 19203
Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTT 221
|| |||||||| | |||||||| ||||| |||||
Sbjct 19204 ATAGACTACCATC--AGGTTGATAGCGCAGACAATTT 19238
>seq707
Length=72046
Score = 91.5 bits (100), Expect = 4e-16
Identities = 106/141 (75%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132
||| | ||| || ||||||||||| | |||||||| |||| ||||||||| ||||| ||
Sbjct 34530 ATTAGATAAGTTTCGCGCCTGCTG-TTCCCTTGGATATGGTGGCCGTTTCTAAGGCTTCC 34588
Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192
| | ||| ||||| ||| |||| |||||||||| | ||||| || | | || ||
Sbjct 34589 TTTTCGGTGTCGAAACCTTATTCTACGTTACCCGTAATAATCATGGCAGACTAATAGGCT 34648
Query 193 ACCATCGAAAGTTGATAGGGC 213
||||| | |||||||| ||
Sbjct 34649 ACCAT--TAGGTTGATAGAGC 34667
>seq1454
Length=43931
Score = 82.4 bits (90), Expect = 2e-13
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | |||||| ||| | || | ||||| || || ||||| || ||||||||
Sbjct 22847 TATTTTTGATCACTATCTCATCTATTCAGAATTGGACAAGTTTCGCGCATGGTGCCTTCC 22906
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA 140
|||||||||||||||||||| || ||||||||||||
Sbjct 22907 ATGGATGTGGTAGCCGTTTCTATGGTTCCCTCTCCGGA 22944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509956320000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |