Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq168 174 5e-41 seq122 114 4e-23 seq48 109 2e-21 seq1231 100 9e-19 seq192 98.7 3e-18 seq707 91.5 4e-16 seq1454 82.4 2e-13 >seq168 Length=137536 Score = 174 bits (192), Expect = 5e-41 Identities = 141/170 (83%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 111965 TATTTTTAGTCACTATCTCATCTATTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 112024 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct 112025 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 112084 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGG 212 ||||| |||||||||| | | || |||||||| | |||||||||| Sbjct 112085 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGG 112132 >seq122 Length=153226 Score = 114 bits (126), Expect = 4e-23 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || | |||||| |||||||| Sbjct 150115 TATTTTTAGTCACTATCTCATTAT-TCAAGATTGGATAAGTTCCTCGCCTGTTGCCTTCC 150057 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||||||||||||||||| ||||| || | |||| || |||||| |||| | |||| Sbjct 150056 ATGAATGTGGTAGCCGTTTCTAAGGCTTACTATTCGGAGTCAAACCCTTATTCTCTGTTA 149997 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 || || ||||||||| | | | |||||||| | ||||||||| |||| Sbjct 149996 CCGGTCACAACCATGGTAAACTAATTGACTACCATC--AGGTTGATAGGACAGA 149945 >seq48 Length=196061 Score = 109 bits (120), Expect = 2e-21 Identities = 138/186 (74%), Gaps = 14/186 (8%) Strand=Plus/Minus Query 308 CTAATAAATACACCCCTTCCGAAGTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTAC 366 ||||||| |||||| || | ||| |||||| | |||||||||||||| |||||||| Sbjct 173176 CTAATAATTACACCGCTACAAGCGTCAAGGTTTTATTGCATGTATTAGCTCCAGAATTAC 173117 Query 367 CACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 | | |||||||| ||| | | | | |||||| || | ||| | ||||||||| || Sbjct 173116 CGCAGTTATCCA-ATAGGACG----TTCCGAATAAATGACATCTGCTCTAATGAGCCGTT 173062 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 |||||||| || ||||||| | || ||||||||||||||||||||| | | Sbjct 173061 CGCAGTTT--CTCTATAGAT------GAATTCGACATGCATGGCTTAATCTTTAAACTGA 173010 Query 487 GCATAT 492 |||||| Sbjct 173009 GCATAT 173004 >seq1231 Length=49194 Score = 100 bits (110), Expect = 9e-19 Identities = 98/123 (80%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||||||||||||||| ||||||||||| || | ||||||||| |||||| || | | Sbjct 26814 TGCCTTCCTTGGATGTAATAGCCGTTTCTGAGACCAACTCTCCGGAGTCGAACTCTTACT 26873 Query 155 CCCCGTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 ||||||||| | ||| ||||||||| | | || |||||||| | ||||||||||| Sbjct 26874 ATCCGTTACCC-ATAATAGCCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGC 26930 Query 214 AGA 216 ||| Sbjct 26931 AGA 26933 >seq192 Length=131751 Score = 98.7 bits (108), Expect = 3e-18 Identities = 118/157 (75%), Gaps = 10/157 (6%) Strand=Plus/Plus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA------ 125 || ||| ||| | ||||||||||| || ||||||| ||||| |||||||| | Sbjct 19085 GACTGGATAAGATTCGCGCCTGCTGTCT-CCTTGGAAGTGGTTACCGTTTCTAACTGTAA 19143 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 ||||||||| || || | || |||| |||| ||||||||||| ||||||||| || Sbjct 19144 GGCTCCCTCCCCAGAGTGGAGCCCTTATTCTCCGTTACCCGTAATAACCATGGTAAGCTT 19203 Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTT 221 || |||||||| | |||||||| ||||| ||||| Sbjct 19204 ATAGACTACCATC--AGGTTGATAGCGCAGACAATTT 19238 >seq707 Length=72046 Score = 91.5 bits (100), Expect = 4e-16 Identities = 106/141 (75%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 ||| | ||| || ||||||||||| | |||||||| |||| ||||||||| ||||| || Sbjct 34530 ATTAGATAAGTTTCGCGCCTGCTG-TTCCCTTGGATATGGTGGCCGTTTCTAAGGCTTCC 34588 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 | | ||| ||||| ||| |||| |||||||||| | ||||| || | | || || Sbjct 34589 TTTTCGGTGTCGAAACCTTATTCTACGTTACCCGTAATAATCATGGCAGACTAATAGGCT 34648 Query 193 ACCATCGAAAGTTGATAGGGC 213 ||||| | |||||||| || Sbjct 34649 ACCAT--TAGGTTGATAGAGC 34667 >seq1454 Length=43931 Score = 82.4 bits (90), Expect = 2e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||| ||| | || | ||||| || || ||||| || |||||||| Sbjct 22847 TATTTTTGATCACTATCTCATCTATTCAGAATTGGACAAGTTTCGCGCATGGTGCCTTCC 22906 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA 140 |||||||||||||||||||| || |||||||||||| Sbjct 22907 ATGGATGTGGTAGCCGTTTCTATGGTTCCCTCTCCGGA 22944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509956320000