Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq699 104 1e-20 seq11047 89.7 2e-16 seq6433 89.7 2e-16 seq721 89.7 2e-16 seq2841 86.0 3e-15 seq25989 77.0 1e-12 seq35232 71.6 6e-11 >seq699 Length=99727 Score = 104 bits (114), Expect = 1e-20 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| Sbjct 38509 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAACGGGGAGGAGCCCAGCG 38568 Query 61 CCGAATC 67 | ||||| Sbjct 38569 CTGAATC 38575 >seq11047 Length=6348 Score = 89.7 bits (98), Expect = 2e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 4611 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCAGGTGAATAGGGAGGAGCCCAGCG 4552 Query 61 CCGAATC 67 | |||| Sbjct 4551 CTCAATC 4545 >seq6433 Length=41090 Score = 89.7 bits (98), Expect = 2e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||| ||||||||||||||| || | ||| |||||| Sbjct 1089 GGAAAAGAAACTAACAAGGATTCCCTCAATAACGGCGAGTGAACGGGAAGGAGTCCAGCG 1030 Query 61 CCGAATC 67 | ||||| Sbjct 1029 CTGAATC 1023 >seq721 Length=74390 Score = 89.7 bits (98), Expect = 2e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||| ||||| |||||||| ||||||||| ||||||||| |||| |||||||||| Sbjct 12685 GGAAAAGAAGCTAACAAGGATTCCTTCAGTAACGACGAGTGAACGGGGAGGAGCCCAGCG 12744 Query 61 CCGAATC 67 | ||||| Sbjct 12745 CTGAATC 12751 >seq2841 Length=24295 Score = 86.0 bits (94), Expect = 3e-15 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||| ||||||||||||||| || | ||| |||||| Sbjct 989 GGAAAAGAAACTAACAAGGATTCCCTCAATAACGGCGAGTGAACGGGAAGGAGTCCAGCG 930 Query 61 CCGAA 65 | ||| Sbjct 929 CTGAA 925 >seq25989 Length=1714 Score = 77.0 bits (84), Expect = 1e-12 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| || |||||||||||||||||| |||||| | | | || |||||| Sbjct 1095 GGAAAAGAAACTAACAAG-ATTCCCTCAGTAACGGCGTGTGAACGGAGGAAAGGCCAGCG 1037 Query 61 CCGAATC 67 | ||||| Sbjct 1036 CTGAATC 1030 >seq35232 Length=1264 Score = 71.6 bits (78), Expect = 6e-11 Identities = 56/67 (84%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||| ||||||| | ||||||||||||||||||||| |||||| | ||||| |||| Sbjct 1004 GGAAATGAAACTAGCAAGGATTCCCTCAGTAACGGCGTGTGAACGGATAAGAGGAGAGCG 1063 Query 61 CCGAATC 67 | ||||| Sbjct 1064 CTGAATC 1070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230261209200