Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq35797 122 1e-25 seq4132 104 4e-20 seq17268 96.9 6e-18 seq1150 93.3 7e-17 seq51669 89.7 8e-16 seq58131 84.2 3e-14 >seq35797 Length=1250 Score = 122 bits (134), Expect = 1e-25 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || ||||| ||||||||||||| ||||||| |||||||||||||| Sbjct 387 CTATTTAGCAGGCTAGACTCTCGCTCGTTATCGGAATAAACCAGATAAATCACTCCACCA 446 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||| | |||| | |||||| Sbjct 447 ACTAAGAACGGCCATGCACCAC--CTCATACAGTCAAGA 483 >seq4132 Length=19097 Score = 104 bits (114), Expect = 4e-20 Identities = 73/83 (88%), Gaps = 4/83 (5%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||| ||||||||||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct 15778 AATAAACCAGACAAATCGCTCCACCAGCTAAGAACGGCCATGCACCACCACC----AAAT 15723 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 | |||||||||| |||||||||| Sbjct 15722 CGAGAAAGAGCTTTCAATCTGTC 15700 >seq17268 Length=3972 Score = 96.9 bits (106), Expect = 6e-18 Identities = 168/233 (72%), Gaps = 20/233 (9%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG---TTATTGCC 73 || |||||||||| ||| || | |||||||||||||||||||||| ||| |||| || Sbjct 3060 CACTGTAGCGCGCTTGCAGCTC-GAACATCTAAGGGCATCACAGATCTGATCTTATCGC- 3003 Query 74 TCAAACT--TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC---ACCAACC 128 |||| || | || ||| | || | ||||||||||||| || || | Sbjct 3002 TCAATCTCGTGCA---GCTAAACACCGCTTATCCCTCTAAGAAGT-AGATTTGACGTA-- 2949 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA-CCAGAC 187 | | || | | |||||||||||| || ||||| |||||||| ||| |||||| Sbjct 2948 AAAATCCA-GTCACTATTTAGCAGGCTAGACTCTCGCTCGTTATCTCTCGTAAACCAGAC 2890 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||| ||||||||| |||||| ||||||||| ||| | |||| | |||||| Sbjct 2889 AAATTGCTCCACCAAATAAGAATGGCCATGCATCAC--CTCATACAGTCAAGA 2839 >seq1150 Length=76867 Score = 93.3 bits (102), Expect = 7e-17 Identities = 68/78 (87%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||| ||||||||| ||| ||||||| ||||| |||||| Sbjct 13700 CTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGAAATAAACCAGAAAAATCGCTCCAC-- 13643 Query 202 ACTAAGAACGGCCATGCA 219 |||||||||||||||||| Sbjct 13642 ACTAAGAACGGCCATGCA 13625 >seq51669 Length=5201 Score = 89.7 bits (98), Expect = 8e-16 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||| |||||||| ||| ||||||| ||||| |||||| Sbjct 4115 CTATTTAGCAGGCTAGAGTCTCGCTCGTTATCAAAATAAACCAGAAAAATCGCTCCAC-- 4058 Query 202 ACTAAGAACGGCCATGCA 219 |||||||||||||||||| Sbjct 4057 ACTAAGAACGGCCATGCA 4040 >seq58131 Length=2241 Score = 84.2 bits (92), Expect = 3e-14 Identities = 70/83 (84%), Gaps = 6/83 (7%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||| |||||||||||||||||||||| ||||||| |||| |||| |||| | || || Sbjct 580 AATAAACCAGACAAATCACTCCACCAGCTAAGAATGGCCGTGCA--ACCATC---AG-AT 527 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 | |||||||||| |||||||||| Sbjct 526 CGAGAAAGAGCTTTCAATCTGTC 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796304015655