Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq721 170 4e-40 seq11047 77.0 6e-12 >seq721 Length=74390 Score = 170 bits (188), Expect = 4e-40 Identities = 173/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| | ||||||| |||||||||||||||||||| |||| ||||| ||||||| Sbjct 11526 AGATTGAG-CGATAACAGATCTGTGATGCCCTTAGATGTCTGGGGCTGCACGTGCGCTAC 11584 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || ||| || | || ||| || | |||| ||||| ||||| | | ||||| Sbjct 11585 AATGGAAGAATCAGCTAG--CATATCCATTGCCGAAAGGTACTGGTAAACCGTTGAAACT 11642 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | |||| ||||||| | |||| ||||||| | |||||||||||||| ||||||||| Sbjct 11643 CCTCCGTGACCGGGATAGGGAATTGTAATTATTTCCCTTCAACGAGGAATTCCTAGTAAG 11702 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||||||| | || |||||||||||||||| |||||| Sbjct 11703 TGTGAGTCATCAGCTCACGCTGATTACGTCCCTGCCATTTGTA 11745 >seq11047 Length=6348 Score = 77.0 bits (84), Expect = 6e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||| ||||||| ||| || ||||||| ||||||||| | | ||||||||| |||| | Sbjct 5646 ATTGTAATTATTTTCCTTGAATGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCGCGCT 5587 Query 307 GATTACGTCCCT 318 |||||||||||| Sbjct 5586 GATTACGTCCCT 5575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946591376640