Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq462 237 5e-60 seq23586 233 6e-59 seq4148 188 2e-45 seq52051 178 4e-42 seq2130 170 6e-40 seq7675 156 1e-35 seq1192 127 7e-27 seq9108 95.1 4e-17 seq12844 86.0 2e-14 >seq462 Length=97523 Score = 237 bits (262), Expect = 5e-60 Identities = 187/222 (84%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCAC 243 || |||||||| || | || | || ||||||||||| | || |||| | ||||||| Sbjct 4995 GAATAAGTAAAGAATCAATGAAAGTGGTGGTATTTCATTGTCGACCGAG--GTCTCCCAC 4938 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||| |||||||||||| | | ||||||| ||| |||||||||||||||||||||||| Sbjct 4937 CTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTC 4878 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| || ||||||| |||| |||| |||||||||||||||||||||| Sbjct 4877 TTCTTTCCCCGCTATTTTTGCCAAGCACGTTTGCTTGACTGTGGTTTCGCTAGATAGTAG 4818 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||||||| ||||||||||||||||||||||||||||||| Sbjct 4817 TTAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCA 4776 Score = 165 bits (182), Expect = 3e-38 Identities = 112/126 (89%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 || |||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 250 CAAGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 191 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||| ||||||||||||||| | ||||| || | ||| |||||| ||||||||||||| Sbjct 190 CCCGGCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCGGAGCACTGGGCAG 131 Query 515 AAATCA 520 |||||| Sbjct 130 AAATCA 125 >seq23586 Length=2010 Score = 233 bits (258), Expect = 6e-59 Identities = 304/411 (74%), Gaps = 17/411 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| | ||||| || ||| |||| ||||||||||||||||||| | Sbjct 1822 CTTTTGCTCTACGAAAAATTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 1763 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| ||||||| |||||| | |||||||| | || | | |||| | | | || Sbjct 1762 ATTTGGCAGATGTAGCGCCCCCGTCAAACTCCTCGCCGG-CGCTGTCTCCGGCGAGAGTC 1704 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTCCG 177 | ||| || | | | ||||| | | ||||| | | |||| || | || Sbjct 1703 GCAAGGCCACCGGATGGCTTTGCTTAAGACAAAGAAAAAAGA-GCCGAAGCTCAAT-CCT 1646 Query 178 CTTC--ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAAC 234 |||| | || |||||||| || |||| | || |||||||||| | | |||| Sbjct 1645 CTTCCCACCGAATAAGTAAAGAATCGATGAAAGTGATGGTATTTCATTGTTGACCGAT-- 1588 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 | |||| | ||| |||||||||||| | | ||||||| ||| ||||||| ||||||| Sbjct 1587 GTCTCCTAGCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGCCAAGCTC 1528 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 | |||||||||||||||||||| || ||| ||||||||||||||||||||||||| | Sbjct 1527 AGCAGGGTCTTCTTTCCCCGCTATTTTTACCATGCCCGTTCCCTTGGCTGTGGTTTCGTT 1468 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 1467 GGATAGTAGCTAGGGACAATGGGAATCTCGTTAATCCATTCATGCACGTCA 1417 >seq4148 Length=15233 Score = 188 bits (208), Expect = 2e-45 Identities = 243/342 (71%), Gaps = 49/342 (14%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 |||||||| || | || | ||| ||||||||||| | | |||| | |||| || || Sbjct 11020 TAAGTAAAGAATCCATGAAGGTGGTGGTATTTCATTGTCAACCGAG--GTCTCCTACCTA 10963 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | |||||||||||| | | || | || ||| | |||||||||||||||||| ||||| Sbjct 10962 TGCTACACCTCTCATGACTCTTTATAATGTCAAAGTAGAGTCAAGCTCAACAGAATCTTC 10903 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||| ||| || ||||||||| ||||||| ||||||||||||||| |||||||||| Sbjct 10902 TTTCCCGGCTATTTTTGCCAAGCCCATTCCCTTAGCTGTGGTTTCGCTAAATAGTAGATA 10843 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 | ||||||| ||||| |||||||| Sbjct 10842 CGTACAGTGG------------------------------------GATGATGAGGCATT 10819 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT--------GGTT 478 | |||||||||||| |||| |||||||||||||||||||| |||||| | || Sbjct 10818 T-GCTACCTTAAGAAAGTCGCAGTTACTCCCGCCGTTTACCTGCGCTTACTACTACGATT 10760 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||| || | ||| ||||||||| ||||||||||||| || Sbjct 10759 TAATTACTACGATTTAACATTCAGA-CACTGGGCAGAAAACA 10719 Score = 170 bits (188), Expect = 6e-40 Identities = 235/334 (70%), Gaps = 41/334 (12%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 |||||||| || |||| | || | ||||||||| | | |||| | |||| | || Sbjct 10193 TAAGTAAAGAATCGATGAAGGAGGAGGTATTTCATTGTCAACCGAG--GTCTCCTATCTA 10136 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 | |||||||||||| | | || | || ||| |||||||||||||||||||| ||||| Sbjct 10135 TGCTACACCTCTCATGACTCTTTATAATGTCAAACTAGAGTCAAGCTCAACAGAATCTTC 10076 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||| ||| || |||| |||| |||||| ||||||||||||||||| |||| ||| Sbjct 10075 TTTCCTGGCTATTTTTACCAAACCCGCTCCCTTCGCTGTGGTTTCGCTAGACAGTACATA 10016 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 | ||||||| ||||| |||||||| Sbjct 10015 CGTACAGTGG------------------------------------GATGATGAGGCATT 9992 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 | |||| ||||||| ||||| |||||||||||| ||||||||||||| | ||||| || Sbjct 9991 T-GCTAGCTTAAGAAAGTCACAGTTACTCCCGCAATTTACCCGCGCTTACTCGAATTACT 9933 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||| ||||||| | || ||||||||||||| Sbjct 9932 ACGATTTAACATTCA-AACATTGGGCAGAAATCA 9900 >seq52051 Length=4564 Score = 178 bits (196), Expect = 4e-42 Identities = 115/126 (91%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4426 CATGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 4485 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||| | ||||| || | ||| |||||||||||||||||||| Sbjct 4486 CCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAG 4545 Query 515 AAATCA 520 |||||| Sbjct 4546 AAATCA 4551 Score = 131 bits (144), Expect = 5e-28 Identities = 74/75 (99%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGTTAATC 60 Query 391 CATTCATGCGCGTCA 405 ||||||||||||||| Sbjct 61 CATTCATGCGCGTCA 75 >seq2130 Length=38784 Score = 170 bits (188), Expect = 6e-40 Identities = 123/141 (87%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 |||| |||||| | | ||||||| ||| ||||||||||||||||| | |||||||||| Sbjct 23247 TACATCTCTCACGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAA-ATGGTCTTCTTT 23189 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 ||||||| || ||||||||||||| ||||||| ||||||||||||||||||| |||| Sbjct 23188 CCCCGCTATTTTTGCCAAGCCCGTTCTCTTGGCTATGGTTTCGCTAGATAGTAGTTAGGT 23129 Query 370 ACAGTGGGAATCTCGTTAATC 390 ||||||||||||||||||||| Sbjct 23128 ACAGTGGGAATCTCGTTAATC 23108 >seq7675 Length=7739 Score = 156 bits (172), Expect = 1e-35 Identities = 110/126 (87%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 || |||||||| || |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 261 CACGCGCGTCAGTAGTTAGCTGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 202 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||| ||||||| |||||| | ||||| || | ||| |||||||||||||||||| | Sbjct 201 CCCGCTGTTTACCTGCGCTTACTCGAATTGCTACGATTTAACATTCAGAGCACTGGGCGG 142 Query 515 AAATCA 520 ||| || Sbjct 141 AAACCA 136 Score = 77.0 bits (84), Expect = 1e-11 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 4986 ATAGTAGTTAGAGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 4940 >seq1192 Length=61310 Score = 127 bits (140), Expect = 7e-27 Identities = 88/100 (88%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT 339 || || ||| ||||||||||||||||||||||||||| || ||||||||| ||||||| Sbjct 26543 ACAAGGGTCTAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCTTTCCCTT 26484 Query 340 GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 |||||||||||||||||||||||| |||| || |||| || Sbjct 26483 GGCTGTGGTTTCGCTAGATAGTAGTTAGGAACGGTGGAAA 26444 >seq9108 Length=6523 Score = 95.1 bits (104), Expect = 4e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||| | |||||||||||||||||||||| |||||||| | ||||| || | ||| ||| Sbjct 6269 AGACAATCATAGTTACTCCCGCCGTTTATCCGCGCTTACTCGAATTACTACGATTTAACA 6210 Query 498 TTCAGAGCACTGGGCAGAAATCACA 522 |||||||| ||||||||| |||||| Sbjct 6209 TTCAGAGCGCTGGGCAGAGATCACA 6185 >seq12844 Length=10759 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/95 (81%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||| | |||||| | |||| |||| || | ||||||| |||||||| ||||| Sbjct 10229 CAAGCTTAGCAGGGTTTA--TTCCTCGCTATTT--GTCAAGCCCATTCCCTTGATTGTGG 10174 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 ||||||||| |||||| ||||||| |||||||||| Sbjct 10173 TTTCGCTAGGTAGTAGTTAGGGACCGTGGGAATCT 10139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634149302240