Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oesophagostomum_20dentatum_20[genbank_20GCA_5F000797555.1_202014-12- 15] 64,255 sequences; 443,017,110 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq721 176 1e-41 seq6329 105 2e-20 seq11199 91.5 4e-16 >seq721 Length=74390 Score = 176 bits (194), Expect = 1e-41 Identities = 310/441 (70%), Gaps = 28/441 (6%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || || ||| ||| | ||||| ||||||||||| Sbjct 16544 TATTTTTAGTCACTATCTCATCTCTTCAAGAGTGGATAAGCTACGCGCTTGCTGCCTTCC 16485 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATC-GAACCCTAATTCCCCGTT 161 |||||||||||||||| |||| |||||||||||||||| || |||||| |||| ||||| Sbjct 16484 TTGGATGTGGTAGCCGCTTCTAAGGCTCCCTCTCCGGAGTCAAAACCCTTATTCTCCGTT 16425 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||||| |||||||||| | | || |||||||| ||| | ||||||| | || Sbjct 16424 ACCCGTAATAACCATGGTAGACTAATAGACTACCATC----ATTGGTTGGGCAGACACTT 16369 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAG 280 ||| |||| ||| |||| | || || | | ||||| || || | || Sbjct 16368 TTTCGAAATATCGGCGG-ACAAGCCGCTGATATGCAGCA--TTATTTAGAGCCAGCGAAC 16312 Query 281 GAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT 340 | |||||| ||| ||| |||||||| | ||||| ||| ||||| | |||| Sbjct 16311 TACATCCGAAGATGATTG--ATTTGCTCTAATAATTGCACCCTTTCGAAAGTCAGAGTTT 16254 Query 341 -TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT-CAAA 398 || |||||||||||||| |||||| |||| |||||||| || | ||| | | || Sbjct 16253 ATTCGCATGTATTAGCTCCAGAATTGCCACAGTTATCCA------AAAGGACTTTCCGAA 16200 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| || | || | || | ||| ||||||||| || ||||| | | Sbjct 16199 TAAGTGACATTTGCTCTACCGGGCC-GTCGCAGTTT--CTCCTTAGAT------GAGCTC 16149 Query 459 GACATGCATGGCTTAATCTTT 479 ||||||||||||||||||||| Sbjct 16148 GACATGCATGGCTTAATCTTT 16128 >seq6329 Length=10405 Score = 105 bits (116), Expect = 2e-20 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| || ||| |||| ||||||||||||| ||| || ||||||||||| |||||||||| Sbjct 165 TGGATATGTTGAGCGCTTGCTGCCTTCCTTAGATATGATAGCCGTTTCTAAGGCTCCCTC 106 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||||| ||||||| | |||| ||||||||| || || | | | | | |||| Sbjct 105 TCCGGAGTCGAACCTTTATTCTTCGTTACCCGCAATAACTATAATGGACTAACAGACTAC 46 Query 195 CATCGAAAGTTGATAGGGCAGA 216 || | | |||||||||||||| Sbjct 45 CACC--AGGTTGATAGGGCAGA 26 >seq11199 Length=10450 Score = 91.5 bits (100), Expect = 4e-16 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||||||||| |||||||||||| |||| ||| |||| |||| | ||||||||| Sbjct 1709 TGTGGTAGCCGTTTCTAAGGCTCCCTCTCTGGAACCGAGCCCTTATTCTCGGTTACCCGT 1768 Query 168 TGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 || || |||| | || |||||||| | ||||||||||||| Sbjct 1769 AATAACTATAGTAGACTGGTAGACTACCATC--AGATTGATAGGGCAGA 1815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509429492480