Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq45 154 6e-35 seq20450 105 3e-20 seq24470 102 3e-19 seq3393 100 1e-18 >seq45 Length=26709 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || || ||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 10883 AGAGCGTATATGCTGGGACCCGAAAGATGGTGAACTATACCTGAGCAGGATGAAGCCAGA 10824 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| || |||| ||||| ||||||||||||||||| | || ||| Sbjct 10823 GGAAACTCTGGTGGAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCTGACTTTGGT 10764 Query 674 ATAGGGGCGA 683 |||| ||||| Sbjct 10763 ATAGAGGCGA 10754 >seq20450 Length=1140 Score = 105 bits (116), Expect = 3e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||| |||| |||| | || ||| |||||||||| ||||||||| | | || Sbjct 953 ACCCGAAAGATGATGAATTATGTCCGAGGAGGATGAAGCCAGAAGAAACTCTGATTGCGG 894 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | |||| ||||| ||||||||||||||| || | ||||||||||||| Sbjct 893 CCCAAAGCGATTCTGATGTGCAAATCGATCGTGTAACATTGGTATAGGGGCGA 841 >seq24470 Length=959 Score = 102 bits (112), Expect = 3e-19 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||| ||||| || |||||||||||||| |||||||||||| | Sbjct 88 CGAAAGATGGTGAACTATACCTGAGCGGGATGAAGCCAGAGGAAGCTCTGGTGGAGGTCC 29 Query 634 GCAG-CGGTTCTGGCGTGCAAATCGATC 660 | || || ||||| |||||||||||||| Sbjct 28 GAAGACGATTCTGACGTGCAAATCGATC 1 >seq3393 Length=4828 Score = 100 bits (110), Expect = 1e-18 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| Sbjct 3986 GGAACCGAAAGATGGTGAACTATACCTGAGTAGGATGAAGCCAGAGGAAACTCTGGTGGA 3927 Query 629 GGCTCGCAGCGGTTCTGGCG 648 | || |||| ||||| || Sbjct 3926 AGTCCGAAGCGATTCTGACG 3907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079024625600