Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5575 134 2e-29 seq9976 116 6e-24 seq3892 82.4 1e-13 >seq5575 Length=3383 Score = 134 bits (148), Expect = 2e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || || ||| ||||||||||||| || ||||||||||||||||||| Sbjct 1033 CTATTTAGTAGGCTAGAGTTTCGCTCGTTATCGGAATAAATCAGACAAATCACTCCACCA 974 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||| |||| ||| |||||| ||||||||| ||| |||||| Sbjct 973 ACTAAGAACGGCCGTGCATTACCAACCACCGAATCATGAAAGAGCTCTCAGTCTGTC 917 >seq9976 Length=2138 Score = 116 bits (128), Expect = 6e-24 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 128 GAATAAACCAGACAAATCACTCCACCAACTAAGAACGGCCGTGCACCACTAAACATAGAG 69 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||| |||||||||| Sbjct 68 TCATGAAAGAGCTGTCAATCTGTC 45 >seq3892 Length=4366 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA-GAATCAAGAAA 242 |||||||||| ||||||||||| |||||||||| ||||| || ||| |||||| |||| Sbjct 3626 AGACAAATCATTCCACCAACTACGAACGGCCATACACCATCA--AATAGGAATCATGAAA 3683 Query 243 GAGCTATCAATCTG 256 ||||| |||||||| Sbjct 3684 GAGCTCTCAATCTG 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796449001632