Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq11015 165 1e-38 seq6084 107 3e-21 >seq11015 Length=1965 Score = 165 bits (182), Expect = 1e-38 Identities = 132/158 (84%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 || |||||||||| ||| ||| |||| |||| ||||||| ||||||| || ||||| | Sbjct 1339 CATTAGGGTAAAATTAATCTGACTCACGACGATCTAAACTAAGCTCACTTTTTCTATTGG 1280 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||| ||||||||||||| ||| |||| |||||||| |||||||||||| ||| |||| Sbjct 1279 TGGTTGAACAATCCAACACTTGGCGAAGTCTGCTTCACAATGATAGGAAGAACCGTCATC 1220 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||| ||||||||||||| ||||||||| | |||||||| Sbjct 1219 GAAAGATCAAAAAGCAA-GTCGCTATGGATGCTTGGCT 1183 >seq6084 Length=3163 Score = 107 bits (118), Expect = 3e-21 Identities = 112/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||||||| | |||||||||| ||| ||||||| |||| || |||||| || |||| Sbjct 420 GACATCGAAAGTTCAAAAAGCAGCGTAACTATGAATACTTGACTATCACAAGTCAATTAT 479 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGA--CTAAAGGATCG 265 | |||||||||||||||| ||| ||| || ||| ||| | | | ||||||||| Sbjct 480 TCTTGTGGTAACTTTTCTGACACTTCTTGCTAAAAACCTTCTAATAATTCAAAAGGATCG 539 Query 266 ATAGGCCACACTTTCATGGTTTGTA 290 |||||| || ||||| |||||||| Sbjct 540 ATAGGCTACGCTTTCGCGGTTTGTA 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854011487232